Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1556 ATGGATAGGGTGTTCTCAGTCGATGAAATCCCCGATCACTTTTGGTCGCCGCCGATTCCCGCCACCGGCGTCGACGGCGGCTCCTCCAACATGAGCCGAAGCCATTCCGAGTGGGCCTTCCAGCGCTTCCTCCAGGAAGCTTCCGCCGCCTCTCCACCTTCTGCATCATCCGCTGCTGACGATGTCGCTTTCGTCGAGATCCAGGGTCAGCACAAATCCAGCACCGGCGTCGCCGCCGCGCCCACTCCGGTGAACGGTGGTGTTTTGTCCGATGGGCCTCCTAACGCGCCCGTTGATTCCGATGAGTACCGGGCCTACCTCAAGAACAAGCTCAATGAAGCTTGTGCTGCTGTCGCCATGACTAGGGGATCTTTGGTTAAATCTCAGGATCCAGCCACTTTTCCTGACGGTGGATCACAGCCTTCTAATCCTTCTCAACTTGGATCTCAGCCTACTTTTAAAGGATCTGGCCCTTCTGGAAATGATCCTTCTAAATTACAAGATAAGGAAACCAAAGTACCAATTGTGATTCCTTCCGTGCCTACCGTGCAAAAGAAACCTATTTTTGTTATCAGGCCATCAACTAGTGGGTCATCAAGAGAACAGTCTGATGATGATGAAGCTGATGGAGAGACAGATATCAATACTGACAACATGGACCCTTCTGATGCAAAACGAGTAAGGAGGATGCTTTCCAATAGGGAGTCAGCCAGACGTTCAAGAAGAAGAAAACAGGCTCATTTAACTGATCTGGAAACACAGGTTTCTCAATTAAAAGGTGAAAATTCTTCCTTGTTAAAGCGCTTTTCTGATGTAAGCCAGAAATTCAATGATTCTGCTGTTGACAACAGAGTATTAAAAGCTGATGTTGAAACCTTAAGAGCAAAGGTGAAGATGGCTGAAGAGACTGTCAAAAGAATTACAGGGTTGAACCCAATGTTTCATGCCATGTCTGAGATATCATCAATGGGCATGCCACCATTTGCTGGAAGCCCTTCAGACAATTCAGTTGATGCAGCTGTTCCTGTGCAAGATAACTCACATCATCAACAATTCTATCGGCCTGTGTCTAATAATCCTATGCCCAGACATGATCTGAGAGTCAACAATGGTTTGGGGGACATTTCTTCAATTGAAAATGTGCAGCAGCAGAATGGTGCAGCAGTGGCAGGTGGGAACAAGATGGGTCAAGCAGCTGCTCCCCTGCAGAGGGTGGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGGTGTGGATTCATGTGGAGCTCCTTCTAATGGAGAGCAGTAA 1293 0.4834 MDRVFSVDEIPDHFWSPPIPATGVDGGSSNMSRSHSEWAFQRFLQEASAASPPSASSAADDVAFVEIQGQHKSSTGVAAAPTPVNGGVLSDGPPNAPVDSDEYRAYLKNKLNEACAAVAMTRGSLVKSQDPATFPDGGSQPSNPSQLGSQPTFKGSGPSGNDPSKLQDKETKVPIVIPSVPTVQKKPIFVIRPSTSGSSREQSDDDEADGETDINTDNMDPSDAKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLKGENSSLLKRFSDVSQKFNDSAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMFHAMSEISSMGMPPFAGSPSDNSVDAAVPVQDNSHHQQFYRPVSNNPMPRHDLRVNNGLGDISSIENVQQQNGAAVAGGNKMGQAAAPLQRVASLEHLQKRIRGGVDSCGAPSNGEQ* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1556 430 SUPERFAMILY Leucine zipper domain 225 274 IPR046347 GO:0003700|GO:0006355
Lja5g1556 430 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 228 243 IPR004827 GO:0003700|GO:0006355
Lja5g1556 430 Coils Coil 241 268 - -
Lja5g1556 430 Coils Coil 283 303 - -
Lja5g1556 430 MobiDBLite consensus disorder prediction 70 97 - -
Lja5g1556 430 SMART brlzneu 221 285 IPR004827 GO:0003700|GO:0006355
Lja5g1556 430 Gene3D - 224 278 - -
Lja5g1556 430 MobiDBLite consensus disorder prediction 127 224 - -
Lja5g1556 430 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 223 277 IPR004827 GO:0003700|GO:0006355
Lja5g1556 430 MobiDBLite consensus disorder prediction 231 250 - -
Lja5g1556 430 Pfam bZIP transcription factor 224 272 IPR004827 GO:0003700|GO:0006355
Lja5g1556 430 Pfam Basic leucine-zipper C terminal 292 419 IPR020983 -
Lja5g1556 430 PANTHER BZIP TRANSCRIPTION FACTOR 1 411 - -
Lja5g1556 430 MobiDBLite consensus disorder prediction 133 164 - -
Lja5g1556 430 PANTHER BASIC LEUCINE ZIPPER 63 1 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1556 Lja-Chr5 16452485 16457548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1556 1 314 bZIP Transcription Factor Family AT4G02640 41.124 4.80e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja5g1556 bZIP_C 1.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1556 K25784 - gmx:100170702 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1556 5 16452485 16457548 Lja5g1556 5 16452485 16457548 ECH
Lja1g0195 1 1700667 1704636 Lja5g1556 5 16452485 16457548 PCT