Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1550 ATGGAGCAGTATGAAGTACTTGAGCAAATAGGAAAAGGTTCTTTTGGTTCCGCGCTTCTCGTGAGGCATAAGCATGAGAAGAAAAAATATGTGCTCAAGAAGATTCGTCTTGCTCGCCAAACTGAGCGCTCTCGAAGATCTGCGCACCAGGAGATGGAACTCATCTCTAAATTACGAAACCCTTTTATTGTGGAGTATAAAGACTCATGGGTAGAAAAGGGCTGCTATGTCTGCATTATTATTGGTTATTGCGAGGGCGGAGATATGGCTGAAGCTATAAAGAAAGCTAATGGTGTTCTGTTTTCTGAGGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTTATGGCACTTGACTACCTGCAAAGGAATCACATTCTTCACCGTGATGTCAAGTGTTCAAATATCTTTTTGACGAAGGATCGTGATGTACGCCTGGGTGATTTTGGACTTGCCAAAATGTTGACTTCCGATGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGACATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGGCAGCACATAAGCCTGCATTCAAAGCATTTGATATACAAGCATTAATTAACAAGATTCATAAGTGCATAGTGGCTCCACTGCCAACAAAATATTCTAGTTCATTTCGAGGTCTTGTTAAGAGCATGCTGCGTAAAAACCCAGAGCTTAGGCCCAGTGCTTCAGAGCTTCTTGGGCACCCGCATCTTCAACCCTATGTTCTTAAGATCCACCTTAAAATCAATAGCCCGAGGCGGAGTACATTACCTGCTCATTGGCCAGAACCAAACTACATGAAGAAAACTAGATTTTTGGTGTCAGAAGATGATACTGTTTCCATCTATAGGGATAGGCGGAATTCTTTCAGCAATCGGGCTCTAAATCCTAGTGTATCTGGAGCTGATCAAGATTCTGTATGCTCAACCCTAGAAATAGATTGTATTCCTGATAATTTGAATCAAAGGTTAGCAGAACTACGCATCAGAGATAGCCGTGAAGTCAAGTCAATCCATAAGCCTGTTGTTTCCAGAACTTCTAGTATTGCTAAGACTCGGAGACTCACTTCATCAAAAGTTTCTACCACCAACAAGAAACCAGTGGGACCCTCTAAGGATCGTAAAGTGCTTACTTTTTCAAATAGCACAAAATCTGCCCAGACTAATCGCAGAGCATCATTTCCAATGCCAACAAAGGGTGGTATTCAGCAGCCTCCTTGCAGGCAAAGTGTTGCTGTGCTTAGCCCCGTGTCTTCGCTGGATATCTCCGTCAACTCTCCCCGTATTGACAAGATAGCTGAATTTCCATTAGCATCATACGAAGAGTCATTCCCTATTAATAGAGTATCAACCTCTGCACAAGATTCATCTCATGACAATCATTCAACTGTGATAGACAAATGCACTGTAGAGGTACTTGATAGAACTTCTAGTAGGCCTAGTCGTAACGATGCCTGGCAGGGAATCAAGCGCAGCATGTTAAAGGAAATTGATGAGGATAAAAGTGGTTCCTCTGATAAAAATGCAACAGCAGGTGCATCAAGCCGCACATCTTCTGACTTGCGGCGCCAACAGTTTGACACTTCATCATTCCAACAAAGAGCTGAAGCCTTGGAAGGCTTGCTTGAATTTAGTGCAAGATTGCTGCAGCAGGCAAGGTATGATGAACTTGGGGTTTTATTGAAACCATTTGGGCCTGGGAAAGTTTCCCCAAGGGAAACTGCTATCTGGTTGAGTAAGAGCTACAAAGAGAACAATTTAAACCTGGAAGAACCCCTGTAA 1842 0.4278 MEQYEVLEQIGKGSFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFSEEKLCKWLVQLLMALDYLQRNHILHRDVKCSNIFLTKDRDVRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKAFDIQALINKIHKCIVAPLPTKYSSSFRGLVKSMLRKNPELRPSASELLGHPHLQPYVLKIHLKINSPRRSTLPAHWPEPNYMKKTRFLVSEDDTVSIYRDRRNSFSNRALNPSVSGADQDSVCSTLEIDCIPDNLNQRLAELRIRDSREVKSIHKPVVSRTSSIAKTRRLTSSKVSTTNKKPVGPSKDRKVLTFSNSTKSAQTNRRASFPMPTKGGIQQPPCRQSVAVLSPVSSLDISVNSPRIDKIAEFPLASYEESFPINRVSTSAQDSSHDNHSTVIDKCTVEVLDRTSSRPSRNDAWQGIKRSMLKEIDEDKSGSSDKNATAGASSRTSSDLRRQQFDTSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSYKENNLNLEEPL* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1550 613 MobiDBLite consensus disorder prediction 366 387 - -
Lja5g1550 613 Gene3D Transferase(Phosphotransferase) domain 1 86 306 - -
Lja5g1550 613 CDD STKc_Nek 3 258 - -
Lja5g1550 613 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1550 613 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 598 - -
Lja5g1550 613 MobiDBLite consensus disorder prediction 395 414 - -
Lja5g1550 613 MobiDBLite consensus disorder prediction 516 548 - -
Lja5g1550 613 PANTHER SERINE/THREONINE-KINASE NEK4 1 598 - -
Lja5g1550 613 MobiDBLite consensus disorder prediction 366 425 - -
Lja5g1550 613 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1550 613 SUPERFAMILY Protein kinase-like (PK-like) 1 315 IPR011009 -
Lja5g1550 613 MobiDBLite consensus disorder prediction 526 548 - -
Lja5g1550 613 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lja5g1550 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lja5g1550 613 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Lja5g1550 613 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1550 Lja-Chr5 16367944 16376182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1550 10 259 MAP Kinase Kinase Kinase AT1G53570 31.765 7.24e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lja5g1550 Pkinase 3.3e-63 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1550 5 16367944 16376182 Lja5g1550 5 16367944 16376182 ECH
Lja1g0212 1 1833512 1840562 Lja5g1550 5 16367944 16376182 PCT