Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1549 ATGTTTGATGGAGTCCCAGACCAGTTCCACCAATTCATAACACCAAGGACTTCACTTCCTCTTCACTTACCTTTCCCTCTCCATGCTTCTTCAGCCCCTAACAATAACACCACCTTCCCTTCTTTTGATCCTTACAACCCTTCTCATCATCAATTGCCATTCCAGCCCAATCTCTTGCACCACCCATTACACCACAAAGATGAAGAGAAGGAAGAAAACAACAACACAGTGCAGCCAAATCCAATGAACTTTCAAATTGAAAGAGATCAAAGACAACAACTACCTCAGCTTCAGCAGCAGCAGGTTGATCCCTGGACAAATGATGAAGTTCTTGCTCTTTTAAGGATCAGATCTAGTATGGAGAGTTGGTTCCCAGAGTTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAAGTTGGATACAAGAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAGACTAGATATTTCAACAACATTAATTACACCAACAAGAGTACTAATATTAATAATTATCGGTTTCTCACTGAGCTTGAAGAGCTTTATGAGGAGGTAGGGACTGAGAAGAGTACTACTCATCAGCAGCAGCAGCAACAACAAGACAAGATGGAGGAGCGTGCAGCATTGGATGATCAGGATCATCATGATGATTCGGTTGATCAAACAAAACAAAACAAGGCTCAAAGTGAGGAGGATCAAGAGAAAATCATGAAGGAGAGGAAGAGGAAGAGGGTTGATGATAGGTTTGAGGTGTTCAAGGGGTTTTGTGAGAGTGTTGTGAACAACATGATGGCTCGGCAGGAAGAGATGCACAGGAAAATCATTGAGGACATGGTGAGAAGAGATGAAGAGAAGTTCTCAAAAGAGGAAGCATGGAAGAAGCAAGAGATGGATAAGATGAACAAGGAGCTTGAGATGATGGCACATGAGCAAGCTATTGCTGGTGATAGGCAAGCCAACATCATTCAATTCTTGAAGAATTTTGAGAAAAGTCAAAGATTTGGAAGCGGAAATGGAAAAGAGAAACTCAAGGTAACAAGTGAAGATTCTTCCACATTGCTCTCACAAAACCCTAGTCCTTCACCTTCTTCTACTTTACCTACTTCATGTGCACTTGTAGTAGCTGAAAACCCTAGCTCAATTAATCTTGGTCAAGACACATCATCACGAGTTGTTGTTCCTTTTGAGAACCCTAGTTCTTCTCTAAATCCACAAGAGACAAATTCTGTTTTGATTCATAAAGGCTCCACTATAGAGAAAGATGATGTTGGGAGAAGGTGGCCAAAAGATGAGGTTTTGGCACTGATAAACCTAAGGTGCACTAGCAACAACAATGAGGACAAGGAAGGGAACAATAAGGCACCACTATGGGAGAGAATCTCACAAGGGATGTTAGAGTTGGGATACAAGAGGAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAGGAAAACCAAGGATAACACTAGTAAGAAGAGGTCCCTTGATTCAAGGACATGTCCCTACTTCCATCAACTCAGCAATCTGTATAATCAAGGGAAACTTGTTCCACAATCTGAAAGGCCAGAAGGGAAATTGAATAATGCGGCAGCAAATAATAATGCACCAGATCAAATTACCCCTCAAGCTGAGTCTTCTTCCACCCAAGTGGGGTCTGGTTGTGGTAATTTCACTGTGCAGCAGCAGCAACAGCAGAAGGTTGATGATCATGAAGGTGAGAAAACTTCGATGCAGCAAGTACCTTCTTTGGATTTTGATCAGTTTTAA 1788 0.42 MFDGVPDQFHQFITPRTSLPLHLPFPLHASSAPNNNTTFPSFDPYNPSHHQLPFQPNLLHHPLHHKDEEKEENNNTVQPNPMNFQIERDQRQQLPQLQQQQVDPWTNDEVLALLRIRSSMESWFPEFTWEHVSRKLAEVGYKRSAEKCKEKFEEETRYFNNINYTNKSTNINNYRFLTELEELYEEVGTEKSTTHQQQQQQQDKMEERAALDDQDHHDDSVDQTKQNKAQSEEDQEKIMKERKRKRVDDRFEVFKGFCESVVNNMMARQEEMHRKIIEDMVRRDEEKFSKEEAWKKQEMDKMNKELEMMAHEQAIAGDRQANIIQFLKNFEKSQRFGSGNGKEKLKVTSEDSSTLLSQNPSPSPSSTLPTSCALVVAENPSSINLGQDTSSRVVVPFENPSSSLNPQETNSVLIHKGSTIEKDDVGRRWPKDEVLALINLRCTSNNNEDKEGNNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDNTSKKRSLDSRTCPYFHQLSNLYNQGKLVPQSERPEGKLNNAAANNNAPDQITPQAESSSTQVGSGCGNFTVQQQQQQKVDDHEGEKTSMQQVPSLDFDQF* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1549 595 MobiDBLite consensus disorder prediction 350 369 - -
Lja5g1549 595 ProSiteProfiles Myb-like domain profile. 428 486 IPR001005 -
Lja5g1549 595 MobiDBLite consensus disorder prediction 187 243 - -
Lja5g1549 595 MobiDBLite consensus disorder prediction 532 572 - -
Lja5g1549 595 PANTHER - 13 573 - -
Lja5g1549 595 MobiDBLite consensus disorder prediction 335 369 - -
Lja5g1549 595 MobiDBLite consensus disorder prediction 201 243 - -
Lja5g1549 595 ProSiteProfiles Myb-like domain profile. 104 156 IPR001005 -
Lja5g1549 595 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 13 573 - -
Lja5g1549 595 Pfam Myb/SANT-like DNA-binding domain 427 515 IPR044822 -
Lja5g1549 595 Pfam Myb/SANT-like DNA-binding domain 103 182 IPR044822 -
Lja5g1549 595 Coils Coil 221 241 - -
Lja5g1549 595 Gene3D - 105 161 - -
Lja5g1549 595 Gene3D - 429 491 - -
Lja5g1549 595 MobiDBLite consensus disorder prediction 524 595 - -
Lja5g1549 595 CDD GT1 427 493 - -
Lja5g1549 595 SMART sant 425 488 IPR001005 -
Lja5g1549 595 SMART sant 101 158 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1549 Lja-Chr5 16352610 16355401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1549 1 519 Trihelix Transcription Factor Family AT5G28300 40.102 3.67e-93 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja5g1549 Myb_DNA-bind_4 8.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1549 - - gmx:100804367 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1549 5 16352610 16355401 Lja5g1549 5 16352610 16355401 ECH
Lja1g0213 1 1844142 1846550 Lja5g1549 5 16352610 16355401 PCT