Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1542 ATGAATGGAGTCACACACCATGAACAAGATGATTCTGAGTTTGTTGAAGTTGATCCAACTGGGAGATACGGCAGATACAATGAAATCCTCGGCAAAGGAGCTTCAAAGACAGTATATAGAGCATTTGATGAGTTTCAAGGGATTGAAGTTGCTTGGAATCAGGTCAAGCTGTATGATTTCCTGCAGAGCCCTGAAGATCTTGAAAGGCTTTACTGTGAAATCCATCTCCTGAAAACTTTGAAGCACAAAAACATTATGAAATTTTACACCTCATGGGTTGACACTGCTAATAGGAATATCAACTTTGTCACTGAAATGTTCACCTCTGGTACACTGAGACAGTATAGGCTGAAGCACAAGAGAGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCCTGAGAGGACTTAACTATCTTCATAGCCTTGACCCTCCTGTGATCCATAGAGATCTCAAATGTGATAATATTTTTGTCAATGGAAACCAAGGGGAAGTTAAAATTGGGGATCTTGGTCTCGCCGCAATTTTACGCAAATCCCATGCTGCTCATTGTGTAGGAACGCCTGAGTTCATGGCCCCAGAAGTTTATGAAGAGGCATATAATGAATTAGTTGACATATATTCCTTTGGGATGTGCATATTAGAGATGGTCACATTTGAATATCCTTATAGTGAATGCACTCATCCAGCTCAAATATACAAGAAAGTTATTTCTGGGAAAAGGCCAGATGCTTTGTATAAAGTGAAGGACCCAGAAGTGCGCCGATTTGTAGAGAAATGCTTGGCCACAGTTTCTCTAAGGCTTTCTGCAAGGGAGCTTCTAGATGACCCGTTTCTCCGAATAGATGATTATGAATATGATTTGAGACCTACAGACAGTGGGGAATTCAACGACTTTGGTCCGCATATCAGACAGCCATTCTTTGATCTTCAGCGAAGCTATAGTAACTTCAGTAATGAATACTCGAACGGCTTTGGTTATGAAGGAGACTGGTCTTCTCACCCAGCTGAGATTGAAACTAGTGGAATTGAACTTTTTGAGTACCATGATGATGAGCCCTCTGAACATGTGGACATTAGCATCAAGGGAAAGAGGAAAGATGATGGAGGCATATTTTTGAGACTAAGAATTACTGATAAAGAAGGTCGTATTCGAAATATTTACTTCCCATTCGACATAGATATGGACACAGCATTAAGTGTGGCTACTGAAATGGTAGCAGAACTCGACATCACTGATCAGGATGTTACCAGAATAGCAGATATGATAGATGGGGAAATTGCTTCTTTGGTACCTGAATGGAGACCAGGACCAGGAATCGTCGAAACTCCCCGTTTTTCGAGTCAAGGTTTCTGTCACAATTGTGTGTCTAATCATACTTCTAGTGGCTCCCTTCTGGAGTTTCTTTCACATAATCAGGGGCAACATCTCGAGTGCTGTAAGCATGGATGTGCTTCAATGCATGGTCGGTTTGAGGAGATCACCTTCCAATCTGAGGAGTATGACAGACATGTTACAGAGGATCTGAAAATATCAAGCCAATCAAATCACTTGCAGTATCAGGAGTTATGGAATCAGCACGAAAGTCGTGAACTGAGTCCCGTGGAGTCTGATCTAAGCCATTCTGATGAACAATATGAACAATTATTAGATAAAACAGTATCAGCTGAAGATAAAGGACAGGATGTTTGTGAAAACAAGTTCGCCCCCAATACAAATTCCTTAAGAAATTTGTCAGGAACTCATGATTTCTCCGCTGTCCGTTCGTTGTACTGTGACCTCGAGGATGACTATGGGAAAGAGATTCAAACGGAACTGAGATGGCTCAAAGCAAAATACCAAATGGAGTTAAGGGAAATCAAGGATCAACAGTTGGGGCTAACAGCTAAATCTTCACACAGTAGTAACAGAGAGGACAATGCAGATTATGGCATTATGCCACTTTCACTGGCAGAAATGTTAAAAGGAGGTAACTGGAATTGTGATTTGAGCAACCATAAAAGCAGCCCCAATTTTGACACCCAAAGGGCGCAAATTTGCGAGGCGATGGAATCCATTGGGGAAGGTACAGCAAAGGGTTTTCACACAGGTTCGTTGATTCCACACTCTTTGCACAGGACAGTTTCCCTCCCAGTTGATGCTGTTGATGTATGA 2160 0.4171 MNGVTHHEQDDSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEFQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLNYLHSLDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKRPDALYKVKDPEVRRFVEKCLATVSLRLSARELLDDPFLRIDDYEYDLRPTDSGEFNDFGPHIRQPFFDLQRSYSNFSNEYSNGFGYEGDWSSHPAEIETSGIELFEYHDDEPSEHVDISIKGKRKDDGGIFLRLRITDKEGRIRNIYFPFDIDMDTALSVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIVETPRFSSQGFCHNCVSNHTSSGSLLEFLSHNQGQHLECCKHGCASMHGRFEEITFQSEEYDRHVTEDLKISSQSNHLQYQELWNQHESRELSPVESDLSHSDEQYEQLLDKTVSAEDKGQDVCENKFAPNTNSLRNLSGTHDFSAVRSLYCDLEDDYGKEIQTELRWLKAKYQMELREIKDQQLGLTAKSSHSSNREDNADYGIMPLSLAEMLKGGNWNCDLSNHKSSPNFDTQRAQICEAMESIGEGTAKGFHTGSLIPHSLHRTVSLPVDAVDV* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1542 719 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1542 719 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1542 719 CDD STKc_WNK 22 281 - -
Lja5g1542 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Lja5g1542 719 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 683 - -
Lja5g1542 719 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Lja5g1542 719 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 374 428 IPR024678 GO:0004674|GO:0005524
Lja5g1542 719 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Lja5g1542 719 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1542 719 Gene3D - 371 435 - -
Lja5g1542 719 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 683 - -
Lja5g1542 719 Gene3D Phosphorylase Kinase; domain 1 7 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1542 Lja-Chr5 16253051 16256864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1542 1 503 MAP Kinase Kinase Kinase AT3G22420 58.608 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lja5g1542 Pkinase 9.8e-49 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1542 5 16253051 16256864 Lja5g1542 5 16253051 16256864 ECH
Lja1g0222 1 1897524 1900883 Lja5g1542 5 16253051 16256864 PCT