Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1540 ATGCTTTCCCCATTGGTTTCTTGGATCCTCTCCTCCTCAACCTCTTCCTCCTCCTCATCATCATCAGAAGAAGAACAAGGAAGCCTTGACACTGACCAATCAGACTATGAAAATGACGAGCAGAAGAACAATGTGGAAGATGATGGAAACGACCACTTTTTCAGTTCAAGCGATGTTGATGATGACACCATTCCTGTCGCGCTTGCCGTTTCCCATGCCTCCCCAGCCGTGACAGTTGCTTTCCCTGCCGCTGCTGAAGATAGAAACGCCGCTGCCGCCACCACCACTGCCACCATGATAGCCTTGCCAGCTGCTGCTGAAGATAGAAACACCGCTGCCGCCACGTCCACTGCCACTATGATAATGACTCGCTCAAAACGAGAGCGCAGCAGCAGCAGCAGCAACAAGTACTCCGCCGGGGTGAGACAGTATCAGAGGCTGTGGACGAAGCAGGATGAGATGGAACTGTTGAAAGGGTACCATGATTACATCAAGCAGCAGGGAAAGGCCACAACCTCTCTCCAGAATGTCGTAGCTTTGTTGCATGATCACGTTAGGCCGAAACTAAACGTGGATTTCAACAGAAACCAGCTTGTGGAGAAGCTGCGCAGGTTAAAGAGAAAGCACAAGGTAACTTTGGACAAAGGCAAGGAGGTTCAGGTTCCCTTCAAGAGCTCCCATGAGCAGGCCATTTTTGAAATTTCCCACAAGATTTGGGGCAATGACACAGGCAATGATGCTTTGGATGGTGAAGAATTGAGACCTTATCATGAAAATCATGATCTTGTTGGCAATGATGTTAAGGGAAAGAATGAACAAGTTGAAGATTGTGATGACATAGAAAAAAGGGAGCCAAAGCGATTGCGGTTTGTTACAGATGATGTTGACACAACAAATGAGGAAAACAATGATGCTGCAGCTACTAGAATACAGGGTCTCATTGAGGACACCATGAGGTCCTGTTTCTCACCATTGATGAAGGAATTATTGAATGATTCTCGGGAAGAGCCGCTCGGAGCGCCAGCAACGCCGATATTCCCCGGGGAAGAGGCGGATGAACAATGGAGAAGGAGAAGAATTTTGGAGCTGGAGGTGTATTTGGATAGGTTGGAGTTGTTGCAGGGTCAGATCAAGGCTAGATTGGAGGAGTTGCGGTCAAGCCGAGGTTAA 1170 0.4829 MLSPLVSWILSSSTSSSSSSSSEEEQGSLDTDQSDYENDEQKNNVEDDGNDHFFSSSDVDDDTIPVALAVSHASPAVTVAFPAAAEDRNAAAATTTATMIALPAAAEDRNTAAATSTATMIMTRSKRERSSSSSNKYSAGVRQYQRLWTKQDEMELLKGYHDYIKQQGKATTSLQNVVALLHDHVRPKLNVDFNRNQLVEKLRRLKRKHKVTLDKGKEVQVPFKSSHEQAIFEISHKIWGNDTGNDALDGEELRPYHENHDLVGNDVKGKNEQVEDCDDIEKREPKRLRFVTDDVDTTNEENNDAAATRIQGLIEDTMRSCFSPLMKELLNDSREEPLGAPATPIFPGEEADEQWRRRRILELEVYLDRLELLQGQIKARLEELRSSRG* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1540 389 PANTHER BNAANNG10740D PROTEIN-RELATED 99 387 IPR007592 GO:0006355
Lja5g1540 389 MobiDBLite consensus disorder prediction 35 58 - -
Lja5g1540 389 Coils Coil 367 387 - -
Lja5g1540 389 PANTHER BNAANNG10740D PROTEIN-RELATED 1 100 IPR007592 GO:0006355
Lja5g1540 389 MobiDBLite consensus disorder prediction 1 58 - -
Lja5g1540 389 MobiDBLite consensus disorder prediction 1 27 - -
Lja5g1540 389 Coils Coil 195 215 - -
Lja5g1540 389 Pfam Protein of unknown function, DUF573 145 240 IPR007592 GO:0006355
Lja5g1540 389 PANTHER TRANSCRIPTION FACTOR GEBP FAMILY-RELATED 1 100 - -
Lja5g1540 389 PANTHER TRANSCRIPTION FACTOR GEBP FAMILY-RELATED 99 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1540 Lja-Chr5 16245682 16246851 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1540 142 386 GeBP Transcription Factor Family AT5G28040 35.294 4.85e-41 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Lja5g1540 DUF573 2.7e-23 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1540 - - gmx:102662842 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0226 1 1934783 1936413 Lja5g1540 5 16245682 16246851 PCT