Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1539 ATGGCATCGGAGCGAAACGACACCGTTTTCCCCGAAGAAGATCTCGACGACGACGACCAAACCCTAGAAGACGAAGAAGATCTCGACGACGACGTTTTAGGCGAACCAGACGAAGACGAAGACGAAGAACCCGAACCCTCTCCTTACCCCATCTCCGCCGCCGCCGCCTCCGTCACCGTCGCCTTACCCGCCACCGTCATCCCGGAATCCCCGGATCCAAAACGCCCCCGCACGGAGGAGAAGAAAGCAACCCCCCTCGACGACTCACGGAGGCTGTTCCAGCGTCTGTGGACCGACGAGGACGAGATCGGGCTCCTGCAAGGGTTTCTGGAATACTCATCGCAGCGAGGTTCCTCTCACCACAACGACACCGCTCTGTTCTACGATCAGATCAAGTCGAAGCTCCAGCTAGGGTTCAACAAGAACCAGCTCGTCGAGAAGCTGAGGAGGTTGAAGAAGAAGTACCGCAATGTTCTCAGTAAGATCAGCTCCGGGAAGGAATTCTCCTTCAAGAGCCCTCATGATCAAGCTACCTTCGAAATCTCCCGCAAGATCTGGAGTGTTGCTGCTCCGATTGCTGGTCCTGGTGAAGATGATGACGAAATCAACCTTAACTCTAACCCTAACCCTAATTATGGTCATTTGAACGAGGCGGCGGCGATTGAGAAGAAAACACCGCCGTCTAGGAAGCGGTCGCGGCCTCTTGCTCAATTGGGGGTGATCAAAATAGAGGAGAAAGAAGAGAAGCGTGAGTTGAATGATGATTCAGTGTTGAATAAGGATAAGGATAACAATTATAATCTCAACAATCATAGTGAGGATTATAATGGTAACATTGGTAATGGTAGGCATAGCAGCATGAAGGGTTTGATTGAAGAGACGGTGAGGAGTTGCGTGACGCCGGTGTTGAAGGAGTTGGCCAGTGGTGCCAATTCCATGGGGAGTCCTTTTGGATTTGGGGGAAGAGGGTTTGGGGTTGGCGGGTTCGAGTCGAATCACTTGCCATTGGGTTTGTTGAATTTTGGGGTTGGTGAAATGGTGAAGGATGAGAAGTGGAGGAAGCAACATATTTTGGAGCTGGAAGTGTATTCCAAGCGTTTGGAGCTGGTGCAGGGTGAGATCAAGATTGCTCTGGAGGAGTTGCGATCGGCTGGAGCTGGAGGAAGATGA 1170 0.5179 MASERNDTVFPEEDLDDDDQTLEDEEDLDDDVLGEPDEDEDEEPEPSPYPISAAAASVTVALPATVIPESPDPKRPRTEEKKATPLDDSRRLFQRLWTDEDEIGLLQGFLEYSSQRGSSHHNDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNVLSKISSGKEFSFKSPHDQATFEISRKIWSVAAPIAGPGEDDDEINLNSNPNPNYGHLNEAAAIEKKTPPSRKRSRPLAQLGVIKIEEKEEKRELNDDSVLNKDKDNNYNLNNHSEDYNGNIGNGRHSSMKGLIEETVRSCVTPVLKELASGANSMGSPFGFGGRGFGVGGFESNHLPLGLLNFGVGEMVKDEKWRKQHILELEVYSKRLELVQGEIKIALEELRSAGAGGR* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1539 389 Pfam Protein of unknown function, DUF573 93 187 IPR007592 GO:0006355
Lja5g1539 389 PANTHER BNAANNG10740D PROTEIN 1 385 - -
Lja5g1539 389 PANTHER BNAANNG10740D PROTEIN-RELATED 1 385 IPR007592 GO:0006355
Lja5g1539 389 MobiDBLite consensus disorder prediction 1 86 - -
Lja5g1539 389 Coils Coil 360 380 - -
Lja5g1539 389 MobiDBLite consensus disorder prediction 262 279 - -
Lja5g1539 389 MobiDBLite consensus disorder prediction 72 86 - -
Lja5g1539 389 Coils Coil 141 161 - -
Lja5g1539 389 MobiDBLite consensus disorder prediction 10 46 - -
Lja5g1539 389 MobiDBLite consensus disorder prediction 249 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1539 Lja-Chr5 16232620 16234142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1539 1 388 GeBP Transcription Factor Family AT5G28040 45.125 1.89e-87 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Lja5g1539 DUF573 8.2e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1539 - - cam:101492301 388.267