Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1524 ATGAGTGAGAGAGCGAAGAAGGAAAAGCCAACGGAGAAGAAAGAGAGGATGAAGAACATCTTCAAGAAGCTTCACATAGGGAGCAGTCACGATCCTCATCGATCCAACGAAACCACGCCGCCACCTGCACCCTCGCCCTCCTGCGCCGCCGAGCACGCTCAGAACTCCGCCGCATCTCCGGCCACTCCTTCCGCGTCGCCGGCACCGGCACCTCCCGCGCCGCCTGCTCCCGTCCCCGCCCCGATGGTTTCTCGGCAGGATTTTTTCTCGTCGGAGGAGGAGTTTCAGGTGCAGCTTGCCCTAGCTATCAGTGCTTCCAATTCAGACTTCCGTGATGATCCTGAGAAGGATCAGATCCATGCCGCCACGCTGCTGAGCCTGGGAGGTCATCGGATGGATTCGGCGAGGAATAAGGACGATGTGGCGGAAGCGCTGTCTAGGCAGTACTGGGAGTACAATGTGCTGGACTATGAAGAGAAAGTAGTAGATGGTTTTTATGATGTATTTGGGCTCTATAACGATTCGGCAATGCAAGGAAAGATGCCATCTATAGCAGACCTTGAAGCAAATCCTGGTAGTTCTAGCTTTGAAGTGGTCATAGTTAATCCGACAATTGATCCTGCCTTGGAAGAGCTGATGCAAATTGCACATTGTATTGCATTAGACTGCCCTGTCACAGAGATTGGTATTTTGGTACAAAGGCTTGCTGAGCTTGTTACAAACCATATGGGTGGTCCTGTGAAGGATGCTAATATTATATTGGCAAGATGGACGGAAACAAGTACAGAGCTAAGGACATCTCTTCACACAAGTGTTTTGCCTCTAGGGTCCTTAAATATTGGGCTTTCTAGGCATCGTGCTTTGCTTTTCAAGGTATTAGCTGACAAAATTAAGATGCCTTGTAGATTGGTCAAAGGTAGTCATTACACTGGTGTTGAGGATGATGCTGTCAACATTATAAAGTTGGAGGATGAAAGGGAGTTTTTAGTTGATCTCATGGCTGCCCCTGGAACTCTTATTCCAGCTGATATTTTGAATACAAAGGATAATGCCTTTCCCAAGATTTTACCGAGTTTGCCTTCCACTAAGGAAGCTGGATTTTCTTACTCAAGACCTATCCTGCCATCTCATGGTGAAGGTAGCAGTCAAACTTCTGTGATAAAAGATCATTCACCACCCTGGAATGGAAAGTCATATGTCGAGAAGTCAGAGTATATGCCTTTGAACTTGGGTTTAAGCAGAGATACTGACGTTGGTCCTTCTAAAATTCCTAATAAAGGGATTCCTAACCAACTGGGAAATTCAGAACCCTCGCATGGTATTTCTCTGTACAAAGGGACTCTTGGAATGAATGCAGTTGGTGATGGGACGAGATTGAATGTTAATGTTGTACCATATGCCCAGAACAATCTCAATGACTCTCAGAACCTTTTTGCTGATCTTAACCCATTCCTGATGAAAGGCACTAGGAAGACCTCTGTGCTTAATAAACCTGTGGAAAATAAACCGCCTGAGCTCCAGAACACTAAAAACAATACTAATTCTGCTCAACCAGTTGGACCACTGATGTGGAAGAATCGCCATGCCTATAATGAGGTCCCGAGGAAAACTAATTATAACAATAATGAATATAACCGTCCTTTATTTGTTTCCAATGCTTCTTCATCTGAAAATACTGATCTCCATAATTCTAAATTGTCATACATTTCAAATATAAATAATGATGTAAATACTCAAACTTCGGCACAAGCTACTAGTTCAGCCTCACCAGTTGGTGTAGGTGGACTGAACCGGATTGAGGATCCCAATGCCGATTTTAACAGGAGGAATTGGGATAACTCTCAAAATGTCATGGCAGAGGCAGTTAAAGAACCTGAAAACATTGAATTCAGACATCATGACCGAAGGAAGTGCATACATGACAGATTCATGGGAAGCAATTTGAAATTAAAAGATCCAGAGAGTCCTAGCTCTTCATTTGATTATGTTACAAACAGGGTTGATTCTTCAATATTGGATGATGTAGACGTTGGTGAATGTGAGATTCCATGGGAGGATCTGGTTCTTGGTGAAAGAATTGGTCTAGGTTCATATGGGGAGGTATACCATGCAGACTGGAACGGCACGGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGCGCTGCCTTGTCTGAGTTCAAAAGAGAAGTACGGATAATGCGTAGGCTGCGGCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACTCGGCCTCCCAACCTCTCAATCATTTCAGAGTTTCTTCCAAGAGGAAGCCTGTACCGGATTCTCCATCGCCCTAATTGTCAGCTCGATGAGAAACAGAGAATAAAAATGGCTCTGGATGTGGCTAGGGGCATGAATTGCTTACACACCAGCACACCAACAATTGTTCACCGAGATCTAAAGTCCCCAAATCTTTTGGTTGATAAGAACTGGAACGTTAAGGTTTGTGATTTTGGGTTGTCACGCTTGAAGCACAACACATTTTTGTCATCCAAATCAACTGCTGGAACGCCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAGCCTTCAAATGAGAAGTGTGATGTTTATAGTTTTGGGGTCATCCTATGGGAGCTTGCCACTCTAAGGTTGCCGTGGACTGGAATGAATCCTATGCAAGTTGTTGGTGCTGTGGGCTTTCAAAACCGTAGACTGGAAATTCCTAAGGAACTTGATCCTTTAGTTGCCAGAATAATCTGGGAATGTTGGCAACAGGATCCAAATTTGCGCCCCTCGTTTGCACAGCTTACGGTGGCTCTGAAGCCCCTGCAGCGTTTGGTTATCCCATCTCATCAAGACCAGGTAGCTCCACCTCTGCCGCAGGAGATTTCTGTAAATTCTACCCCATGA 2907 0.4496 MSERAKKEKPTEKKERMKNIFKKLHIGSSHDPHRSNETTPPPAPSPSCAAEHAQNSAASPATPSASPAPAPPAPPAPVPAPMVSRQDFFSSEEEFQVQLALAISASNSDFRDDPEKDQIHAATLLSLGGHRMDSARNKDDVAEALSRQYWEYNVLDYEEKVVDGFYDVFGLYNDSAMQGKMPSIADLEANPGSSSFEVVIVNPTIDPALEELMQIAHCIALDCPVTEIGILVQRLAELVTNHMGGPVKDANIILARWTETSTELRTSLHTSVLPLGSLNIGLSRHRALLFKVLADKIKMPCRLVKGSHYTGVEDDAVNIIKLEDEREFLVDLMAAPGTLIPADILNTKDNAFPKILPSLPSTKEAGFSYSRPILPSHGEGSSQTSVIKDHSPPWNGKSYVEKSEYMPLNLGLSRDTDVGPSKIPNKGIPNQLGNSEPSHGISLYKGTLGMNAVGDGTRLNVNVVPYAQNNLNDSQNLFADLNPFLMKGTRKTSVLNKPVENKPPELQNTKNNTNSAQPVGPLMWKNRHAYNEVPRKTNYNNNEYNRPLFVSNASSSENTDLHNSKLSYISNINNDVNTQTSAQATSSASPVGVGGLNRIEDPNADFNRRNWDNSQNVMAEAVKEPENIEFRHHDRRKCIHDRFMGSNLKLKDPESPSSSFDYVTNRVDSSILDDVDVGECEIPWEDLVLGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNVVLFMGAVTRPPNLSIISEFLPRGSLYRILHRPNCQLDEKQRIKMALDVARGMNCLHTSTPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWTGMNPMQVVGAVGFQNRRLEIPKELDPLVARIIWECWQQDPNLRPSFAQLTVALKPLQRLVIPSHQDQVAPPLPQEISVNSTP* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1524 968 ProSitePatterns Protein kinases ATP-binding region signature. 693 715 IPR017441 GO:0005524
Lja5g1524 968 Pfam Protein tyrosine and serine/threonine kinase 688 937 IPR001245 GO:0004672|GO:0006468
Lja5g1524 968 MobiDBLite consensus disorder prediction 64 81 - -
Lja5g1524 968 MobiDBLite consensus disorder prediction 1 32 - -
Lja5g1524 968 Gene3D Transferase(Phosphotransferase) domain 1 766 948 - -
Lja5g1524 968 MobiDBLite consensus disorder prediction 49 63 - -
Lja5g1524 968 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 79 960 - -
Lja5g1524 968 MobiDBLite consensus disorder prediction 1 83 - -
Lja5g1524 968 ProSiteProfiles Protein kinase domain profile. 687 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1524 968 Pfam Ethylene-responsive protein kinase Le-CTR1 142 340 - -
Lja5g1524 968 SMART serkin_6 687 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1524 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672|GO:0006468
Lja5g1524 968 PANTHER SERINE-THREONINE PROTEIN KINASE 79 960 - -
Lja5g1524 968 PRINTS Tyrosine kinase catalytic domain signature 910 932 IPR001245 GO:0004672|GO:0006468
Lja5g1524 968 PRINTS Tyrosine kinase catalytic domain signature 761 774 IPR001245 GO:0004672|GO:0006468
Lja5g1524 968 PRINTS Tyrosine kinase catalytic domain signature 847 857 IPR001245 GO:0004672|GO:0006468
Lja5g1524 968 PRINTS Tyrosine kinase catalytic domain signature 866 888 IPR001245 GO:0004672|GO:0006468
Lja5g1524 968 PRINTS Tyrosine kinase catalytic domain signature 800 818 IPR001245 GO:0004672|GO:0006468
Lja5g1524 968 Gene3D Phosphorylase Kinase; domain 1 680 764 - -
Lja5g1524 968 MobiDBLite consensus disorder prediction 495 521 - -
Lja5g1524 968 MobiDBLite consensus disorder prediction 502 520 - -
Lja5g1524 968 CDD STKc_MAP3K-like 693 936 - -
Lja5g1524 968 SUPERFAMILY Protein kinase-like (PK-like) 677 959 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1524 Lja-Chr5 16070605 16078963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1524 17 923 MAP Kinase Kinase Kinase AT1G08720 56.474 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lja5g1524 PK_Tyr_Ser-Thr 3.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1524 - - lja:Lj5g3v1426480.1 1760.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1524 5 16070605 16078963 Lja5g1524 5 16070605 16078963 ECH
Lja5g1524 5 16070605 16078963 Lja1g0963 1 9523792 9525731 PCT