Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1518 ATGGGGTGTGTGATTAGCCGAGAAGTGTCATCGGGAATAGTCTCTGAGGTGAAGGAGGAGAAGAGTTTGAGGGTTGACTCCAACAAGAAGGTAGATGAAGTGTCCACTAGCAGGGCTGAGGATAGTGTGGTAGAGGTTCAGAATGGTGACAAGGTTAAGGAGAAGAACGGAGATAAGGGTGGTGATAATGGGGTTCGGCCGCCAAGGGGTGAAAGAAGATCAAAGCTAAACCCAAACCCAAACCCAAACCCGAGGCTAAGTAATCCTCCAAAGCATTTGCAAGGGGAGCAAGTAGCAGCTGGATGGCCATCTTGGCTTACAACAGTGTGTGGGGAAGCCCTTAATGGGTGGATTCCGCGAAAGGCTGACACATTTGAGAAAATAGATAAGATTGGTCAAGGAACATATAGTAATGTGTACAAAGCTAAAGACTTGTTGACGGGTAAGATTGTTGCCCTGAAAAAGGTTCGATTCGACAATTTGGAACCTGAGAGCGTAAAATTCATGGCTAGAGAGATTCTTGTTTTGCGAAGGTTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCCAGAATGTCCTGGAGTTTGTATTTGGTGTTTGAATACATGGTGCATGATTTAGCTGGACTTTCTGCAAGCCCTGATATCAAGTTCACAGAGCCTCAGGTTAAATGCTACATGCATCAACTGCTTTCAGGACTTGAGCACTGTCATAATCGGCGTGTACTTCACCGTGATATCAAAGGATCAAATCTTCTTATAGATGATGAAGGAGTACTGAAAATTGCTGACTTTGGACTTGCATCTTTCTTTGATCCAAACCGCAGGCATCCGATGACCAATCGTGTAGTTACCCTGTGGTACCGACCTCCTGAATTGCTTCTTGGTGCAACGGAATATGATGTGGGTGTGGACCTTTGGAGTGCTGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAACCAATTATGCCTGGTCGTACAGAGGTGGAACAACTACATAAGATATACAAACTTTGTGGTTCACCTTCTGATGAGTATTGGAAGAAGTCAAAGTTGCCTAATGCGACCTTGTTTAAACCTCGAGAGCCATACAAAAGATCCATACGAGAGACATTTAAAGATTTTCCGCCTTCTGCTCTGCCCCTTATTGACACTCTTCTTGCAATTGATCCAGCAGAACGGAAGAGTGCCTCAGATGCTCTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGACCCCTCTAGTCTTCCGAAATATCCCCCAACCAAGGAAATGGATGCTAAACGACGGGATGATGAAGCAAGGAGATTAAGAGCTGCAGGCAAAGCTCATGTTGATGGTGGAAAGAAGCATCGCACACGTGATCGTGCTGTAAAAGCTTTTCCTGCTCCTGAGGCCAATGCTGAGCTTCAGTCCAATATTAATAGAAGGCGTCTAATCTCTCATGCTAATGCCAAGAGCAAGAGTGAAAAATTCCCTCCGCCGCATGAAGATGGACATCTTGGTGTCCCTCTGGGAGCTTCAAATCATATTGATCCAGATAATGTGCCTCATGATGTCTCTTTGGGTTCAACCTCATATATCTTTTCAAAGGTACCATTCCAAGCTTGGTCAGGTCCCATTGGTAATTCTGCTACTAGCATTGGTGTCACAGAGAAGAAGAAACACAATGCAGGATATGCATCGGATAGATCAAAACCACATAAAGGTTCCATCAAGGATAAGGGTAAAGGAAAGAAAATCATAGCTTAG 1767 0.4426 MGCVISREVSSGIVSEVKEEKSLRVDSNKKVDEVSTSRAEDSVVEVQNGDKVKEKNGDKGGDNGVRPPRGERRSKLNPNPNPNPRLSNPPKHLQGEQVAAGWPSWLTTVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDLLTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVIKLEGLVTSRMSWSLYLVFEYMVHDLAGLSASPDIKFTEPQVKCYMHQLLSGLEHCHNRRVLHRDIKGSNLLIDDEGVLKIADFGLASFFDPNRRHPMTNRVVTLWYRPPELLLGATEYDVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRSIRETFKDFPPSALPLIDTLLAIDPAERKSASDALRSEFFTTEPYACDPSSLPKYPPTKEMDAKRRDDEARRLRAAGKAHVDGGKKHRTRDRAVKAFPAPEANAELQSNINRRRLISHANAKSKSEKFPPPHEDGHLGVPLGASNHIDPDNVPHDVSLGSTSYIFSKVPFQAWSGPIGNSATSIGVTEKKKHNAGYASDRSKPHKGSIKDKGKGKKIIA* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1518 588 SUPERFAMILY Protein kinase-like (PK-like) 119 416 IPR011009 -
Lja5g1518 588 PANTHER CELL DIVISION PROTEIN KINASE 65 561 - -
Lja5g1518 588 ProSitePatterns Protein kinases ATP-binding region signature. 131 154 IPR017441 GO:0005524
Lja5g1518 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Lja5g1518 588 Gene3D Phosphorylase Kinase; domain 1 112 207 - -
Lja5g1518 588 MobiDBLite consensus disorder prediction 550 588 - -
Lja5g1518 588 SMART serkin_6 125 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1518 588 Gene3D Transferase(Phosphotransferase) domain 1 208 448 - -
Lja5g1518 588 MobiDBLite consensus disorder prediction 13 73 - -
Lja5g1518 588 PANTHER OS01G0367700 PROTEIN 65 561 - -
Lja5g1518 588 CDD STKc_CDK9_like 125 409 - -
Lja5g1518 588 MobiDBLite consensus disorder prediction 1 94 - -
Lja5g1518 588 MobiDBLite consensus disorder prediction 561 588 - -
Lja5g1518 588 Pfam Protein kinase domain 125 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1518 588 ProSiteProfiles Protein kinase domain profile. 125 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1518 Lja-Chr5 15966752 15972151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1518 117 447 Core Cell Cycle Gene Families AT5G10270 51.873 2.88e-119 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lja5g1518 Pkinase 3.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1518 K08819 - gmx:100817289 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0241 1 2061151 2065725 Lja5g1518 5 15966752 15972151 ECH
Lja5g1518 5 15966752 15972151 Lja5g1518 5 15966752 15972151 ECH
Lja1g0241 1 2061151 2065725 Lja5g1518 5 15966752 15972151 PCT