Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1516 ATGGGTCTTGGTCTTATTTCTGCTGTTTCAAAACTGCAAATGGTGTCCACTTCTGACCATGCCTCCATAGTTTCCATGAACTTGTTTGTGGCACTTCTATGTGCTTGTATAGTCCTTGGCCATCTTCTTGAGGAGAATCGTTGGATGAATGAGTCTATCACTGCCCTTGTGATTGGTGTCTGTGTTGGCGTAGTTATTTTGCTGTTTAGTGGTGGTACAAGCTCGCATATTCTAGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTCCCGCCTATAATATTTAATGCCGGGTTTCAGGTGAAAAAGAAGCAGTTTTTTGTTAACTTCATGACCATCACGATGTTTGGTGCTATTGGTACATTGATATCTTGCACCATCATAACTTTGGGTGCTACGCAAGCTTTTAAGTGGATAGATGTTGGTCCACTGGAAGTGGGGGATTTACTAGCAATTGGTGCAATATTTGCTGCTACAGATTCTGTTTGCACATTGCAGGTGTTAAATCAAGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAAGCTTTGACCTCAATCAAATTAATTCTTCAATTGCTTTGCACTTTTTGGGCAACTTCTTGTATCTGTTTATCGCAAGCACATTGCTTGGGGTTTTGACAGGTCTTCTCAGTGCTTACATCATTAAAAAGCTATACATTGGCAGGCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATGCTGGCCGAATTAGCTTATCTGAGTGGAATTCTCACCGTATTCTTTTGTGGGATTGTTATGTCTCATTATACTTGGCATAATGTGACTGAGAGTTCAAGAATCACTACCAAGCACGCCTTTGCTACCTTGTCGTTTGTTGCTGAGACCTTCATCTTCCTTTATGTTGGGATGGATGCCCTGGACATTGAAAAATGGAAGTTTGTTAGTGATAGCCCTGGAACATCTGTAGCAGTGAGTTCAGTATTGTTGGGTCTAATACTTCTTGGAAGAGCAGCTTTTGTTTTCCCTTTGTCCTTCTTATCCAACTTGGCTAAGAAATCGCAGAATGACAAAATCAGCTTCAGACAACAAGTGATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCTATGGCACTCGCTTATAATCAGTTCACCATGTCGGGGCATACTTCACTGCGGTCCAATGCAATCATGATCACGAGCACCATCACTGTTGTGCTTGTCAGCACAGTGGTTTTTGGTATGCTAACTAAGCCACTGATAAGGCTTTTACTACCGCATACTGATACTAAAACAGACAGCATGGCTTCCCTAGATCCATCTACTCCAAAATCATTCACTGTCCCACTTCTAGGAAGTGCCCAAGATTCTGTAGGCGATTTCGATGCCCATGAAATTCGTCGTCCAAGCAGCATCCGTGCCTTGCTTTCCACTCCAACACACACCGTTCATCGTTTATGGCGCAAGTTTGATAATTCATTCATGCGTCCTGTTTTTGGCGGCAGAGGTTTTGTTCCCGTAGAACCTGGCTCACCATCTGACCGCAGCAACGGTCATCAATGGCATTGA 1632 0.4289 MGLGLISAVSKLQMVSTSDHASIVSMNLFVALLCACIVLGHLLEENRWMNESITALVIGVCVGVVILLFSGGTSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTITMFGAIGTLISCTIITLGATQAFKWIDVGPLEVGDLLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLNQINSSIALHFLGNFLYLFIASTLLGVLTGLLSAYIIKKLYIGRHSTDREVALMMLMAYLSYMLAELAYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFATLSFVAETFIFLYVGMDALDIEKWKFVSDSPGTSVAVSSVLLGLILLGRAAFVFPLSFLSNLAKKSQNDKISFRQQVIIWWAGLMRGAVSMALAYNQFTMSGHTSLRSNAIMITSTITVVLVSTVVFGMLTKPLIRLLLPHTDTKTDSMASLDPSTPKSFTVPLLGSAQDSVGDFDAHEIRRPSSIRALLSTPTHTVHRLWRKFDNSFMRPVFGGRGFVPVEPGSPSDRSNGHQWH* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1516 543 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 542 - -
Lja5g1516 543 Pfam Sodium/hydrogen exchanger family 29 442 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lja5g1516 543 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja5g1516 543 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja5g1516 543 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja5g1516 543 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja5g1516 543 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 25 454 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lja5g1516 543 Gene3D - 146 197 - -
Lja5g1516 543 PANTHER SODIUM/HYDROGEN EXCHANGER 7 542 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1516 Lja-Chr5 15951617 15957246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1516 7 538 Antiporters AT3G05030 77.944 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1516 - - gmx:100816746 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1516 5 15951617 15957246 Lja5g1516 5 15951617 15957246 ECH
Lja1g0244 1 2089918 2094005 Lja5g1516 5 15951617 15957246 PCT