Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1504 ATGGCGAATGATGGTGTTGCTCTCCAACAAGATTATTGTTTATGGGAACCTAAGAAAAGCTCTGATCACAAATCAAAGGAGGTCCGGGATACTAATAATGTTAAACCCCAAACACTAGGATATTTGCTTTCTTGCTCTTCTTCTTCTGCCCAAGACTTAAGGCATTGGGACCTGGAGAGGGAGAAGGATGATGACGGAACTCCAAGAGGAGTCTTAGAGGCATGCATGAAAGAATTTGACTCTCCACTGCTACATGAATCAGAATCTAGTAGTTCAAGCTCAAAGGCAAAGTCTCATTGGAGAAATTTTTTCAAATCGTGGAAGAAAAGATCATTTAAGCGCTTAACATCATCCATCCCTCATATTGGTGTGCCAAAGATACCCAAGTGGAAAAGCAGAAGCACTAGAGAGCATCCTGTTCGAAGTAAATTGTACAACTTCAGGTCTTCTTTGATAACTTTCAGCCTCTCTGACCTCAAAAATGCAACCAACAATTTCAGCCATGAGAATTTAATTGGAAGAGGTGGTTTTTCTGAGGTTTATAAGGGTCGTCTTCAAAATGGGCAACTAATAGCTGTGAAGAAAATGACTAGAGGGAGCACAGATGAGAAGACAGCAGGGTTTCTTTCTGAGCTAGGTGTTATTGCTCATGTTGACCATCCTAATACAGCAAAACTCATAGGATGTGGTGTAGAAGGAGAAATGCACCTTGTCTTTGAACTATCTCTGCATGGAAGTTTAGGGTCTCTTCTTCATGGTTCAGATAGAAAGAAGTTAGATTGGAGTAAAAGATACAAAATTGCTCTGGGAATAGCTGATGGTCTCCTCTATTTGCATGAGAATTGTCATAGGCGAATCATTCACAGAGATATTAAGGCAGATAATATTTTGCTTACAGAGAATTTTGAGCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTGCCAGAACAATTGACTCACCATAATGTGTCAACATTCGAAGGCACATTTGGGTATTTTGCTCCTGAATATTTTATGCATGGCATAGTAGACGAGAAAACTGATGTTTATTCCTTTGGGGTCCTACTTTTAGAGATCATAACTGGGCGTCCAGCTTTGGATCATTTGCAACAGAGTGTTGTGAAATGGGCAAAACCTTTTCTTGATGCTAATAGCATCAAGGACCTTGTTGATCCTTCACTTGGTGATGATTATGACAAAGGACAGATAGGTATTGTTGTTTTGACTGCATCATTGTGCGTTGAGGAGTCTCCTATCTTACGCCCCATCATGAGTCAGATTGTAAAACTGTTAAGAGGTGATGATTGTATCCTATCTAGAAAAGCAAGCAAAAGGAGGACTTTTCACAGAACATACTCAGAAGAGCTGTTGGATGCACAAGATTACAACTCAACAAAATATCTAAGAGATCTCAATAGACATAAACAGCTTGCCTTGGGTTCATGA 1449 0.3996 MANDGVALQQDYCLWEPKKSSDHKSKEVRDTNNVKPQTLGYLLSCSSSSAQDLRHWDLEREKDDDGTPRGVLEACMKEFDSPLLHESESSSSSSKAKSHWRNFFKSWKKRSFKRLTSSIPHIGVPKIPKWKSRSTREHPVRSKLYNFRSSLITFSLSDLKNATNNFSHENLIGRGGFSEVYKGRLQNGQLIAVKKMTRGSTDEKTAGFLSELGVIAHVDHPNTAKLIGCGVEGEMHLVFELSLHGSLGSLLHGSDRKKLDWSKRYKIALGIADGLLYLHENCHRRIIHRDIKADNILLTENFEPQICDFGLAKWLPEQLTHHNVSTFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLEIITGRPALDHLQQSVVKWAKPFLDANSIKDLVDPSLGDDYDKGQIGIVVLTASLCVEESPILRPIMSQIVKLLRGDDCILSRKASKRRTFHRTYSEELLDAQDYNSTKYLRDLNRHKQLALGS* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1504 482 SMART serkin_6 166 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1504 482 PANTHER OS08G0249100 PROTEIN 45 477 - -
Lja5g1504 482 Gene3D Phosphorylase Kinase; domain 1 127 240 - -
Lja5g1504 482 ProSitePatterns Protein kinases ATP-binding region signature. 172 195 IPR017441 GO:0005524
Lja5g1504 482 ProSiteProfiles Protein kinase domain profile. 166 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1504 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Lja5g1504 482 Gene3D Transferase(Phosphotransferase) domain 1 243 452 - -
Lja5g1504 482 Pfam Protein tyrosine and serine/threonine kinase 169 373 IPR001245 GO:0004672|GO:0006468
Lja5g1504 482 SUPERFAMILY Protein kinase-like (PK-like) 148 439 IPR011009 -
Lja5g1504 482 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 45 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1504 Lja-Chr5 15817684 15820816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1504 151 477 Receptor kinase-like Gene Family AT1G53420 40.476 1.45e-71 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lja5g1504 PK_Tyr_Ser-Thr 3.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1504 - - cam:101512181 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0255 1 2182893 2186851 Lja5g1504 5 15817684 15820816 ECH
Lja1g1177 1 12065419 12071703 Lja5g1504 5 15817684 15820816 ECH
Lja5g1102 5 11064267 11068326 Lja5g1504 5 15817684 15820816 ECH
Lja6g2793 6 57017080 57020081 Lja5g1504 5 15817684 15820816 ECH
Lja5g1504 5 15817684 15820816 Lja5g1504 5 15817684 15820816 ECH
Lja1g0255 1 2182893 2186851 Lja5g1504 5 15817684 15820816 PCT