Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1493 ATGACATTCAACAAGAACATCACAGAGGATCAAACTCAAGTCATGAATAGAGAGAGAAACAGAGAGATGGCACTAGAAGCAGTGGTGTATGATCCACAAGCACAAGACCCTTTTGGTTATGGATTCAAAGACTTGTACAACTGCAACTTTCTGGCTGATACTACCAACTGGGGCTATGAAAAACTCAACCTTGAGAAAGATGATAAGCAAATAGAGAATTACCCTTATGGAGATTGGAGTAGCTCCACCACCTCTTCAATGTTACCCCACATGAATGAGCTTCAAGAAACCACTGACCCCAGCAACACTTCAAATTTTGCTTCAGCTAGGCCTAAGAGGCGCAGAGCCAGAAGTAGAAAGAACAAGGAAGAAATTGAGAACCAGAGAATGACTCACATTGCTGTGGAGCGAAATAGAAGAAAGCAGATGAATGAGTATCTCTCTGTTCTTCGCTCTCTCATGCCAGAATCATACATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGGGCTATTAACTTTGTTAGAGAGCTTGAGCAGAGGTTGCAATTTCTTGGTGCTAAGAAAGAATCAGAGGGGAAATCTGAGAATGAAGCTGCAACTGCAAGCATGCCTTTTTCTGAGTTCTTCTCTTTTCCCCAATACTCAACAAGTGCTAGTGGTTGTGATGATTCTGCAGCCATAGGTGAGCATGTTGGTGGGGTTCAATCTGGCATTGCTGATATAGAAGTGACAATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAGCGCCCAAAGCAGCTCTTAAAGATGGTCACTGGTTTGCATACTATGCGCCTCACAATCTTGCACATGAATGTGACAACAACTGGTGAAATTGTCCTCTACTGTCTCAGTGTTAAGGTAGAAGAAGATTGCAAGTTGGGATCAGTGGATGATATAGCTGCAGCTGTATACCAGATGTTGGATAGGATTCACCAAGAGGCAATGCTGAATTAA 987 0.4265 MTFNKNITEDQTQVMNRERNREMALEAVVYDPQAQDPFGYGFKDLYNCNFLADTTNWGYEKLNLEKDDKQIENYPYGDWSSSTTSSMLPHMNELQETTDPSNTSNFASARPKRRRARSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYIQRGDQASIIGGAINFVRELEQRLQFLGAKKESEGKSENEAATASMPFSEFFSFPQYSTSASGCDDSAAIGEHVGGVQSGIADIEVTMVESHANLKIRSKKRPKQLLKMVTGLHTMRLTILHMNVTTTGEIVLYCLSVKVEEDCKLGSVDDIAAAVYQMLDRIHQEAMLN* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1493 328 Gene3D - 111 194 IPR036638 GO:0046983
Lja5g1493 328 MobiDBLite consensus disorder prediction 94 109 - -
Lja5g1493 328 SMART finulus 133 184 IPR011598 GO:0046983
Lja5g1493 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 191 IPR036638 GO:0046983
Lja5g1493 328 MobiDBLite consensus disorder prediction 94 124 - -
Lja5g1493 328 CDD bHLH_AtFAMA_like 130 198 - -
Lja5g1493 328 PANTHER MAX DIMERIZATION, MAD 23 328 - -
Lja5g1493 328 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 23 328 - -
Lja5g1493 328 Pfam Helix-loop-helix DNA-binding domain 128 179 IPR011598 GO:0046983
Lja5g1493 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 178 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1493 Lja-Chr5 15748381 15750916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1493 23 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.003 5.99e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g1493 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1493 - - lja:Lj5g3v1452280.1 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1493 5 15748381 15750916 Lja5g1493 5 15748381 15750916 ECH
Lja1g0267 1 2269786 2271471 Lja5g1493 5 15748381 15750916 PCT