Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1492 ATGGCTGAAATTAATGAAGAGGCTCATGTGGACTTGTCTAATTCTGGAGGCATGAATGAGTCTCAGGATCTGAATGATATCTCAGATAATTCTGATGGAGATGATGTGGTCAATAATGATTCTTCCCAACAACAGTGCAAGCTAATTCCTGAGTTGACTATTGATGAAATTAGGGAGCTGGAGTTTTTGTCTGAGCAGGATGCCGTTGAGTTTTACCAGCACTATGCCCAGTTTAAAGGTTTTGGGGTTAGGAAGGATGATGTTCGGCGCGATCGAAAAGGTAATGTTGTTAGTCGCCAGCTTGTTTGTAATAGGGAAGGTGAGAGACATGAGAAGCATTTGAAAAAGGTTAGTCGAGTGAAAGAGGCTAAGCCAATTACCAGAGTATCATGCCAAGCTAAATTTCGTGTACGTTTCGAGGCAAACTCCAGCAAGTGGAAGGTTGTTTATTTTGAACCTGAGCACAATCATGAGTTGACACTGGCTAAGCAAGTTCATTTAATTCCGGCATTCAGGGGATTGACTAATGGTGATAAGGCTCAAGTTGACACACTAAAGCTCTATGGCGTGAGGAGTTGCAACATAATGGGTCTCATGATGGGACAAAAAGGAGGTGCCATTTCTGCTGCATGCAATTTTCTTAGTGAATATGCCGCTGATGATGCTACAGATTTTTCAGCCGTAATTGAGGATATATACAAACTGGTCTCGAAAGTTCAGAAACGTCGTCATCCGAAATCTACTGAAGGTAATTTATTTGTGATTCGTGACCCAGCTGTCGTGAGAACCCGAGGTGCACGAAAGAAGTTGAAGACTAAGAAGAAGAAAAGACTCTGTTCTAATTGCAGAAAGAGTGGCCACACAATCCGGACATGTCCTACATTGTTTGAGGGAGTCGGAGATGATGAAGTAGATGAAGGAGATTCATCTGTTGAGCTGGATGATGATAGCATTAATGAAAATGTCCTACGCTGA 975 0.4226 MAEINEEAHVDLSNSGGMNESQDLNDISDNSDGDDVVNNDSSQQQCKLIPELTIDEIRELEFLSEQDAVEFYQHYAQFKGFGVRKDDVRRDRKGNVVSRQLVCNREGERHEKHLKKVSRVKEAKPITRVSCQAKFRVRFEANSSKWKVVYFEPEHNHELTLAKQVHLIPAFRGLTNGDKAQVDTLKLYGVRSCNIMGLMMGQKGGAISAACNFLSEYAADDATDFSAVIEDIYKLVSKVQKRRHPKSTEGNLFVIRDPAVVRTRGARKKLKTKKKKRLCSNCRKSGHTIRTCPTLFEGVGDDEVDEGDSSVELDDDSINENVLR* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1492 324 MobiDBLite consensus disorder prediction 12 43 - -
Lja5g1492 324 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 13 238 - -
Lja5g1492 324 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 13 238 - -
Lja5g1492 324 MobiDBLite consensus disorder prediction 300 324 - -
Lja5g1492 324 MobiDBLite consensus disorder prediction 1 43 - -
Lja5g1492 324 ProSiteProfiles Zinc finger CCHC-type profile. 279 293 IPR001878 GO:0003676|GO:0008270
Lja5g1492 324 MobiDBLite consensus disorder prediction 300 315 - -
Lja5g1492 324 Pfam FAR1 DNA-binding domain 70 160 IPR004330 -
Lja5g1492 324 SUPERFAMILY Retrovirus zinc finger-like domains 271 299 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1492 Lja-Chr5 15719631 15722232 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja5g1492 FAR1 5.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1492 - - lja:Lj4g3v0120440.1 177.563