Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1491 ATGAACAACCACCACAATGGAGCCACCACCACCACCCTTTGCTTCTTCCTCCTCCTTGTTCTCATCTCCCCCCTCACCAAAGCACAATCAACAAACAACAACGAAAATGATCCCTACTACAACCGTGTGAGTCCTTCCCTGGCGATCATAATCGTCATCCTTATCGCAGCTCTCTTCCTCATGGGCTTCTTCTCTATCTACATCCGACACTGCTCCGACTCCCCCTCAGCCAGCATCCGCAACCTCACCGGCGCTGCCGGCCGTTCCCGCCGCGGCGCGCGCGGCCTCGACCCTGCCGTCATCGAAACATTCCCCACCCTGGAATACTCCGCGGTGAAGGATCACAAAATCGGAAAAGGCGCGCTAGAGTGCGCGGTTTGCCTCAACGAATTCGAGGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGACCATGTCTTCCACCCGGAGTGCATCGACGAGTGGTTATCCTCCCACTCCACCTGCCCTGTCTGCAGAGCTAATCTCACTCCTCAGCCCGGCGATTCAGTGCGCGGAGTTCCGGTTCTCGCCGCCGGCGAACCGGAAGACGTCGAGGCACAAAACGACGCTGTTCCGGATCAGCAGCAACAAACTGCAGCAGATGCTACGGCTGAACCGGATGTGAATTGCTTGAACCAGACGCTGAGCCGGAACAGAACCAAAGGATCACGGTCTGGCCGGTCGAGGTGGTTTCCTCGATCTCACTCGACAGGTCATTCGTTGGTTCAACCAGGTGAGGACACCGAGCGGTTCACTCTGAGGCTGCCTGTGGAGGTGAGGGAACAGTTACTGAACCAGCAATTGCATCGGGCGAGGAGCTTGATTATCTTGCCTAGAGAAACTAGCTCACGGCGGGGATATCGAACCGGTGGCGGGGAGGGGAGTAGCAGGGGGAAGTCTTCTAGGCGGTTGGACCGGGGTTTTAAATCAGACCGGTGGGTTTTCACCATGGCGCCGCCGTTCCTAGTTAGAGCGTCGTCAATTAGGTCCCCGAGGGTGGGTAATAGCGCCGGTGAAGGAACATCCGCTTCTACGCCGCCGCCACCGGTGGCGCGCCTTCCAGTTTAA 1089 0.5776 MNNHHNGATTTTLCFFLLLVLISPLTKAQSTNNNENDPYYNRVSPSLAIIIVILIAALFLMGFFSIYIRHCSDSPSASIRNLTGAAGRSRRGARGLDPAVIETFPTLEYSAVKDHKIGKGALECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLSSHSTCPVCRANLTPQPGDSVRGVPVLAAGEPEDVEAQNDAVPDQQQQTAADATAEPDVNCLNQTLSRNRTKGSRSGRSRWFPRSHSTGHSLVQPGEDTERFTLRLPVEVREQLLNQQLHRARSLIILPRETSSRRGYRTGGGEGSSRGKSSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVGNSAGEGTSASTPPPPVARLPV* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1491 362 MobiDBLite consensus disorder prediction 332 362 - -
Lja5g1491 362 MobiDBLite consensus disorder prediction 289 310 - -
Lja5g1491 362 Pfam Ring finger domain 123 166 IPR001841 -
Lja5g1491 362 MobiDBLite consensus disorder prediction 196 228 - -
Lja5g1491 362 MobiDBLite consensus disorder prediction 191 254 - -
Lja5g1491 362 CDD RING-H2_EL5_like 123 166 - -
Lja5g1491 362 SMART ring_2 124 165 IPR001841 -
Lja5g1491 362 MobiDBLite consensus disorder prediction 336 350 - -
Lja5g1491 362 SUPERFAMILY RING/U-box 123 173 - -
Lja5g1491 362 MobiDBLite consensus disorder prediction 236 250 - -
Lja5g1491 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 172 IPR013083 -
Lja5g1491 362 PANTHER RING FINGER DOMAIN-CONTAINING 12 307 - -
Lja5g1491 362 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Lja5g1491 362 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1491 Lja-Chr5 15692594 15693992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1491 16 350 Rapid Response to Elicitors AT3G05200 47.143 2.01e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1491 K10664 - gmx:100810865 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1491 5 15692594 15693992 Lja5g1491 5 15692594 15693992 ECH
Lja1g0268 1 2288032 2289552 Lja5g1491 5 15692594 15693992 PCT