Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1489 ATGGAAGTTAATACAACTACCACTGTACCTTCAGAGCCACCTACTGTTGCTAGCCACACTTTCGCAAGACACCACTTGCATTCAGAAAACCATAACCATAGCCATGGCCATTTCCCCTTCAAAACCATTCTCACAACCATTGCAGTGGCTGCCGCAGTCACCATCCTGTTTATCATTTTTCTGGTCTTTTACTTGATCCGCCGCCAAAAACCTTCCGTAAAGAAAGGAACTTGCAAAGATGACAGTAGTAGAGAGCTTCATGACACAAACAGCAGGCTTATTGTTTCAACAATGTTGAGCTTTGATGCTAGCCCAGATGTAAAGGGTGGGTGTCTTCAAGTTCATGGGGGGAATTTGAGCAGGATCCCAGCACCTAAATTTCGAGGAGTTCAAGTGTTCACATACAGGGAGTTAGAAGTTGCAACAGATGGATTCAGTGAAGCAAATGTGATTAGCAATGGAGGGGTTGGTTTGATGTATAAAGGAGTCCTCAGTGATGGAACTTTGGCAGCTATTAAGTTGTTGAGAAGTGAAGGTAAGCAAGGAGAGCGTGCTTTCAGAATAGAGGTTGATCTCTTGAGCCGGCTGCACTCTCCTTATTTGGTGGAGCTACTTGGCTATTGTGCTGACCAACACCACAGATTACTGATTTTTCAATACATGCCCAATGGGACACTCCAACACCATCTTCACTCCCCTAGTGATCAATCTCAGCCGTTGGATTGGTGGGCCCGGATGAGGATAGCCCTTGATTGTGCCAGGGCCTTGGAGTTCCTGCATGAGCATGCGGTGTCACCTGTGATCCACAGAGACTTCAAGAGTAGCAACGTTCTACTGGATCAAAATTTCCGTGCCAAGGTGTCAGATTTTGGATTGGCTAAGATGGGGTCAGAGAAGAGGAACGGTCAGGTTTCTACCCGTGTGTTGGGGACCACTGGATATTTGGCACCAGAGTACGCATCCACGGGTAAGCTTACTACAAAGTCAGATGTTTACAGCTATGGTGTGGTTCTTCTTGAACTGCTAACCGGACGTGTACCAGTTGACATTAAGCGGCCCCCTGGAGAACATGTCCTTGTTTCATGGGCTCTTCCAAGGTTGACAAGCAGAGATAAGGTGGTTGAAATGGTTGATCCAGCTCTACGAGGACAGTACTCAAATAAGGAATTAATTCAGGTAGCTGCCATTGCAGCAATGTGCATACAGCCAGAAGCTGATTACAGGCCTCTCATGACAGATGTTGTACAATCATTGGTACCACTTGTCAGGAACCCATCTTCTCTTAGTTCAACCAGTTCCCTGAGGTTTCATAAACAAATACCAAGACCAAGTCTTTAG 1338 0.4611 MEVNTTTTVPSEPPTVASHTFARHHLHSENHNHSHGHFPFKTILTTIAVAAAVTILFIIFLVFYLIRRQKPSVKKGTCKDDSSRELHDTNSRLIVSTMLSFDASPDVKGGCLQVHGGNLSRIPAPKFRGVQVFTYRELEVATDGFSEANVISNGGVGLMYKGVLSDGTLAAIKLLRSEGKQGERAFRIEVDLLSRLHSPYLVELLGYCADQHHRLLIFQYMPNGTLQHHLHSPSDQSQPLDWWARMRIALDCARALEFLHEHAVSPVIHRDFKSSNVLLDQNFRAKVSDFGLAKMGSEKRNGQVSTRVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPPGEHVLVSWALPRLTSRDKVVEMVDPALRGQYSNKELIQVAAIAAMCIQPEADYRPLMTDVVQSLVPLVRNPSSLSSTSSLRFHKQIPRPSL* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1489 445 Gene3D Transferase(Phosphotransferase) domain 1 221 434 - -
Lja5g1489 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Lja5g1489 445 SUPERFAMILY Protein kinase-like (PK-like) 127 418 IPR011009 -
Lja5g1489 445 Gene3D Phosphorylase Kinase; domain 1 119 220 - -
Lja5g1489 445 ProSiteProfiles Protein kinase domain profile. 145 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1489 445 PANTHER OS01G0750732 PROTEIN 3 440 - -
Lja5g1489 445 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE 3 440 - -
Lja5g1489 445 Pfam Protein tyrosine and serine/threonine kinase 149 418 IPR001245 GO:0004672|GO:0006468
Lja5g1489 445 CDD STKc_IRAK 151 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1489 Lja-Chr5 15679930 15684144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1489 117 432 Receptor kinase-like Gene Family AT3G58690 65.831 3.04e-152 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lja5g1489 PK_Tyr_Ser-Thr 3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1489 - - gmx:100499645 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1489 5 15679930 15684144 Lja5g1489 5 15679930 15684144 ECH