Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1485 ATGGATCATCAAGGGCATGGCCAGAACCCATCTATGGGGGTTGGTGGTAGTGGGCCACAGATGACATATGGTTCTAATCCATACCTTCAGAATCCTCTAACTGGGCCACCTGGGATGGTTGTTTCATCAGCTGGGAATGTTCAATCGACTGGTCAGCCAGTGGGAACTCAGATGGGTCATCCTCAACTTGCTTATCAGCACATCCATCAGCAACAGCAGCAGCAACTTCAGCAGCAGCTCCAAGCCTTTTGGGCAAATCAGTATCAAGAAATTGACAAGGTATCTGATTTCAAGAACCACAGCCTTCCCCTGGCGAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTAAGGATGATATCAGCTGAGGCGCCGGTCGTGTTCGCGAGGGCGTGTGAGATGTTCATATTAGAGCTAACTCTGCGTTCCTGGAATCACACTGAAGAGAACAAGAGGAGAACACTTCAGAAGAATGACATTGCTGCAGCCATCACAAGAACTGATATCTTTGATTTCTTGGTTGACATCGTGCCTCGGGAGGACCTGAAAGATGAAGTGCTTGCAACAATGCCCGGAGGAGCAATGCCTGTTGCTGGGCCTGGTGATGGACTTCCTTATTGCTACATGCCGCCTCAACATGCACAGCAAGTTGGACCTGGAGGTGTCATGATGCATAAACCTGTGATGGACCCGAATATGTATGCTATGCAGCCTGATCCCTTCATGGCACCACAAATGTGGCTCCAACCGCCAGAGCAACAACAATCATCTCCAGACCATTAG 783 0.4917 MDHQGHGQNPSMGVGGSGPQMTYGSNPYLQNPLTGPPGMVVSSAGNVQSTGQPVGTQMGHPQLAYQHIHQQQQQQLQQQLQAFWANQYQEIDKVSDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLATMPGGAMPVAGPGDGLPYCYMPPQHAQQVGPGGVMMHKPVMDPNMYAMQPDPFMAPQMWLQPPEQQQSSPDH* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1485 260 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 101 164 IPR003958 -
Lja5g1485 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Lja5g1485 260 SUPERFAMILY Histone-fold 59 173 IPR009072 GO:0046982
Lja5g1485 260 MobiDBLite consensus disorder prediction 10 32 - -
Lja5g1485 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 260 - -
Lja5g1485 260 MobiDBLite consensus disorder prediction 1 37 - -
Lja5g1485 260 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1485 Lja-Chr5 15629612 15632979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1485 16 254 CCAAT-HAP5 Transcription Factor Family AT1G54830 63.333 4.91e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lja5g1485 CBFD_NFYB_HMF 4.7e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1485 K08066 - gmx:100527803 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0273 1 2334726 2337681 Lja5g1485 5 15629612 15632979 ECH
Lja5g1485 5 15629612 15632979 Lja5g1485 5 15629612 15632979 ECH
Lja1g0273 1 2334726 2337681 Lja5g1485 5 15629612 15632979 PCT