Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1465 ATGGCACCGACAAAGAAATCTAGAAGTGTGAATAAGCGGCTTTCAAATTCAAATGATCTTTCTCCTGAGAAAGATGGAGTTAATTCAAATAAATACAAGCTACGGAAGAAAAAGTTGTCTGATAAATTGGGATCTCAGTGGAGCAAAGAGGAACTACAGCGATTTTATGAAGCATACAGGAAGTATGGGAAAGAGTGGAAGAAGGTGGCATCGGCTGTACGTAATAGATCCATTGAAATGGTGGAAGCTCTTTACAATTTAAATCGGGCATACTTATCTCTGCCAGAAGGGACAGCTTCTGTTGTTGGCCTCATTGCAATGATGACAGATCATTATAGTGTGCTGGATGGGAGTGATAGTGAAAGGGAGAGGAATGAAGCATCGGAATCTCGAAAACCTGTAAAGCGAAAGCGTGAGAAAGTTCAGCTTAGTGTCTCAAAAGATCCTCTCCAGGCTCAGACAATTTCTTCCAGTGATGGTTGTCTCTCTCTATTGAAGAAGAGACGCCTTGATGGTATCCAGCCCCGTGCTGTTGGGAAAAGGACACCCCGTGTCCCAGTCTGCTACTCGTATAGGAAAGATGATAGAGAAAATTATGTTTCACCAAATCAAAGAAGCCTGAAAGCAAATGCTGATGCTAGTGATGATGAAGTTGCACATGTAGCTTTGGCATTAACCAATGCTGCACAAAGAGGGGGCTCTGCCCTAGTTTCTAAAACACCACAAAGGAGAGCAGAGCAAAACTTCTCTCCTGTCCAGAGCTGGGAAAGAATGCACCAAATATCGGCGACAGCTCGGGCTAAGTTTCATGATGTTTCTGTGGATGGAGCGTTTTTGGAAGGAAGTATAGAAAGAAGGGGAGCTGAAAATGGAGAATATGTTAGGGATACTAGTTTCTTGACTGATATGAAAGGAATGAACAGGGTTGATGTTCTTCAGAAAGGGGGGAAATTGTACAAAAAGAAAGAGAAAGTGGAAAATGCTGTACACTATCAGCTTGATGATGGTGTAGAATCATGTAGTGGCACTGAGGAAGGACTTAGCAGTAGTTCTTTGAAGGAAAAAGTTGATCTTGAGGTTACTAATGAGAAACTTGAGCAATTCCCTTCAAGAAGTCAGAGGAAAAGAAGCAAGAAACTCTTCTTTGGAGATGAAATCCCTGCCTTGAATGCTCTGCAAACTTTGGCTGATCTGTCTCTAATGATGCCAACATCTACAATAGAATCTGAATCATCTTCCCTGTTGAAGGGAGAAAGAATGACTGTTGATAAAGATGGCAAGTCTGTTTTACCTGAAGCAACATCAAAAAGTAATAAGAAAAAAAAACTTAAACTCTGTGTGGCCGAGGGAGTTGAGGCTTCAACCACCAAAAAATCTAAACTCGGAAAGGACTCAGCAAATGATACTAATGCTATTTCTGAATCAAAAGAGCAGGTTCCCTTTGCTGATAGAAAATGGAAAAGAAAGCAGAAGTCCCCGATTTCTAAGGCTGTAGAGGGTGAAAACAAACCAGTGATTAAAAGAAAACAAAATGTTCAGGTTTTTGCCCTACCAAAACAATTGAAGACAGTCAAATCACCAGAGAATTCCTTGTGTAGTGATCAGAAAGATTTGGAAGTATCAACTGAAGAAATTCCACTTTTGAATGAAGTTGGTTTAAGTAAACAAAGAAGACTTAAGATGAGTTTACAGAGAACACTCAGGCCTAAAGAGAAGTCTTCTGAGAATATATTGAAAAGTCAACGTAATAAGCACTCCACCCAAAAGGAAAAGCTTTCTAATTGCTTGTCATCTCCTATGGTTCGTAGATGGATTACTTTTGAATGGTTTTATAGCGCAATTGATTATCCATGGTTTGCCAAAAGGGAATTCATTGAGTACTTAAATCATGTTGGATTAGGAAATACCCCAAGGTTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCTCGCAGGTTTTCTGAACACTTCCTACGTGATGAAAGACAAAAACTTCAACAGTATCGTGAATTAGTGAGGAAACATTATACTGAGCTACGGATTGGTGTTAGAGATGGACTTCCAACAGATTTAGCAACACCACTATATGTTGGACAGCGAGTAATTGCTCTTCACCCAAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACAGTGGACCATGACAAGTGCAGGATTCAGTTTAACCGTCCTGAACTTGGCGTTGAATTTGTCATGGACATTGATTGTATGCCTTTAAATCCATCAGATAATATGCCAGAAGCTCTAAGGAGACAGATTGGTGTGAGAAAATCCCCTTTTATGACTAAAGAATCACAGATTAATGGAAATTCACGTTTTGGGGGTTGTGAAAAGCATGCTTCACCTGTGAAGGAAAAGGTTGCTATCATTGATAACCTCTGTGTACAAGCAGCTTGTGCTCAACCGTGTAAAGTGACGCAGCATCAAGCTAAGGAAGCTGATATAAATGCACTTTCTGAACTAAAGAGTGCTCTAGATAAGAAGGAGACACTGTTAATGGAGCTTGGAAATGCAAATAACAACTTATTAGAAAACCAAAATGGTGTGGAATGCTCTAAAGATTCTGAGGCTTTCAAGAAGCATTATGCCATGGTACTTGTAGAGCTAAAGGAAGCCAGTGGACAGGTTTCCCAAGCTACGGTTCAATTGAGGCAACGCAATACTTACACAGGAAACTCTCTGCCACCAAGGATGGATCCCCAAGCAAGCTGCAATATTCACAATCATCTTTCCAGTGCATTGGATAGTTCTCTAGCACAAGAATTAGGGTCAACTGTCATTGAAATCATGAAAGGATCCAGGCTAAAGGCACATGCAATGGTGAATGCTGCATGTCAGGCATTATCATTGACAAAGGAAGGTGAAGATGCTTTTGTGCGGATTGGGCAGGCATTAGATTCTATTGATTATCAGCGATTAGCCTCCAACTCCAAGCTACCTGTGATCAGGTCACAAGATCAAGTGAATGGCACTTATTATAATCGGTCTATTTATTGTGCACCAGAGCCTTTACTCAATGATGCATCTGGACCAAAAGTGCACAATGATTCTGACAAAGTTGATATGGATGTTCTGTCAGATCTCATCACTTCATGTGTTGCTACATTAATCATGATACAGACTTGTACTGAGCGCCAATACCCTCCAGCCGATGTGGTTCAGATATTAGATTCTGCTGTTACAAGCCTGCGTCCATGCTGTCCTCAAAACTTTCCAATTTACAGAGAAATTCAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATCCCTACTTGA 3318 0.4063 MAPTKKSRSVNKRLSNSNDLSPEKDGVNSNKYKLRKKKLSDKLGSQWSKEELQRFYEAYRKYGKEWKKVASAVRNRSIEMVEALYNLNRAYLSLPEGTASVVGLIAMMTDHYSVLDGSDSERERNEASESRKPVKRKREKVQLSVSKDPLQAQTISSSDGCLSLLKKRRLDGIQPRAVGKRTPRVPVCYSYRKDDRENYVSPNQRSLKANADASDDEVAHVALALTNAAQRGGSALVSKTPQRRAEQNFSPVQSWERMHQISATARAKFHDVSVDGAFLEGSIERRGAENGEYVRDTSFLTDMKGMNRVDVLQKGGKLYKKKEKVENAVHYQLDDGVESCSGTEEGLSSSSLKEKVDLEVTNEKLEQFPSRSQRKRSKKLFFGDEIPALNALQTLADLSLMMPTSTIESESSSLLKGERMTVDKDGKSVLPEATSKSNKKKKLKLCVAEGVEASTTKKSKLGKDSANDTNAISESKEQVPFADRKWKRKQKSPISKAVEGENKPVIKRKQNVQVFALPKQLKTVKSPENSLCSDQKDLEVSTEEIPLLNEVGLSKQRRLKMSLQRTLRPKEKSSENILKSQRNKHSTQKEKLSNCLSSPMVRRWITFEWFYSAIDYPWFAKREFIEYLNHVGLGNTPRLTRVEWSVIKSSLGKPRRFSEHFLRDERQKLQQYRELVRKHYTELRIGVRDGLPTDLATPLYVGQRVIALHPKTREIHDGSVLTVDHDKCRIQFNRPELGVEFVMDIDCMPLNPSDNMPEALRRQIGVRKSPFMTKESQINGNSRFGGCEKHASPVKEKVAIIDNLCVQAACAQPCKVTQHQAKEADINALSELKSALDKKETLLMELGNANNNLLENQNGVECSKDSEAFKKHYAMVLVELKEASGQVSQATVQLRQRNTYTGNSLPPRMDPQASCNIHNHLSSALDSSLAQELGSTVIEIMKGSRLKAHAMVNAACQALSLTKEGEDAFVRIGQALDSIDYQRLASNSKLPVIRSQDQVNGTYYNRSIYCAPEPLLNDASGPKVHNDSDKVDMDVLSDLITSCVATLIMIQTCTERQYPPADVVQILDSAVTSLRPCCPQNFPIYREIQMCMGRIKTQILALIPT* 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1465 1105 MobiDBLite consensus disorder prediction 459 500 - -
Lja5g1465 1105 MobiDBLite consensus disorder prediction 116 144 - -
Lja5g1465 1105 MobiDBLite consensus disorder prediction 1 25 - -
Lja5g1465 1105 Pfam Myb-like DNA-binding domain 45 81 IPR001005 -
Lja5g1465 1105 ProSiteProfiles SANT domain profile. 42 77 IPR017884 -
Lja5g1465 1105 Pfam DIRP 609 710 IPR033471 -
Lja5g1465 1105 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1105 IPR028306 -
Lja5g1465 1105 SMART DIRP_2 610 711 IPR033471 -
Lja5g1465 1105 ProSiteProfiles Myb-like domain profile. 45 77 IPR001005 -
Lja5g1465 1105 Gene3D - 4 99 - -
Lja5g1465 1105 MobiDBLite consensus disorder prediction 1 33 - -
Lja5g1465 1105 MobiDBLite consensus disorder prediction 565 589 - -
Lja5g1465 1105 SUPERFAMILY Homeodomain-like 42 90 IPR009057 -
Lja5g1465 1105 MobiDBLite consensus disorder prediction 116 145 - -
Lja5g1465 1105 SMART sant 43 91 IPR001005 -
Lja5g1465 1105 MobiDBLite consensus disorder prediction 478 500 - -
Lja5g1465 1105 MobiDBLite consensus disorder prediction 565 591 - -
Lja5g1465 1105 CDD SANT 47 81 IPR001005 -
Lja5g1465 1105 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 77 IPR017930 -
Lja5g1465 1105 Coils Coil 829 856 - -
Lja5g1465 1105 PANTHER LIN-9 1 1105 IPR010561 GO:0006351|GO:0017053
Lja5g1465 1105 Coils Coil 662 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1465 Lja-Chr5 15498572 15512514 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja5g1465 DIRP 1.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1465 - - lja:Lj0g3v0057329.1 1899.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1465 5 15498572 15512514 Lja5g1465 5 15498572 15512514 ECH