Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1463 ATGCACACCGGCTGTCCTCTTCTTCTTCCTACTAATGCAAACCAAAATAGCTTCATCAGCAATTTTCAAACAAGCCTTGATGGCATGCATTTGAATTTTTTTTTTCTTTTTGTTTCTGGTGTTGCCAATTTTAGTGTGTGGTTTTCGATCGCGAAGAAGGTACACTACACTCACTGCACGCGTGACTGCCAGCGTGAGTTCGGGATCATGTCTGGTTCAATGGCGAGTCTAGTAGCAAGACCTCCTTTGGTTCCCAAGAGGTTTGTTTGGCCTTATGGGGGAAGAACTGTGTTTCTATGTGGTTCTTTCACCAGATGGCAAGCAATTATACCTATGTCGCGGATGGATAGCTGCCCGGATGTATTTGAAGTCCTTTGCAGCTTAATCCCTGGATATCATCAGTACAATTTCTATGTGGACGGTAAGTGGCGGCACGATGAGCAGCAGCCATTTGTAAATGAGATCTTTGGGGTAGTGAATTCTATTTACTTACTGCGACAACCAGATATTTTGTCTACCCTTTTAAGTGCTGAAACACCTGGTGGAGGCCACATGGAGGTTGACAATAGTGCTTCTGGGCCTGTGGAAGCTAATCCAATGATGTCAGAGTCTGATCTGCTAATCTCTCGCCACCGTATATCTACATTCCTGTCTAGAAGTACTGCTTATGATTTGCTTCCTGAGTCAGGAAAGGTTATTGCCTTGGATATAAATTTGTCAGTTAAGCAAGCACTCAGTATTCTTCATGAAGAGGGAATATATTTGGCTCCTATATGTGATTCTAGCACATGCCAGTTTGTTGGAGTGCTTAATGCAATGGACTTCATTCAAATATTGAAAGAGCTGGGGAATCATGGAACAGACCTGACTGAAGAACAACTTGAGACATATACTATAGCAGATTGGAGAGAGGGGAAATTACTGCAATGTGAGACTAATTGTAATGGGAGAGCACGTCCTTGGAACTTTGTTAGTGCTGGGCCTGATGAGTGTCTAAAAGATGTTGCTTCAAAAATTTTGCAAAACAACGTGGCAACAGTTCCTATTATCCATTCTTCCTCAGAGCATGGTTCACTCCCGCAGCTGCTACGACTTGCTTCTCTTTCAGATATTCTAAAACATATATGCAGGTATTTTGAGCACTCTCATGGTTTTTTGCCAGTTCTGCAACTACCGGTCGGTTCAATTCCTCTAGGTACATGGGTGCAAAAAATGGGGGAGTCCAATATAAAGCCACTTGCAATGCTTGGGCCAAATGATTCACTTGGTGCTGCTATGTCTCTCATGATTGAAGCTGAAGTTAGCTCAATCCCAATTGTGCATGATAATGATTCATTACTTGATATATATTCAAGAAGTGATATTACTGCATTGGTTAAAAAAAAAGCATATGCTTGGATAAATCTGGATGAATTTAGTATCCATGAGGCATTGCTTTTGGTACAAGATGGAGAGCTCCTTTACAACCTTCCCAATGGCCAGAGATATCATATGTGTTCGAGGTTTGATTCATTGTGCAAAGTGATGGAGCTTTTGGCTGAACCTGGTGTCGGACGAGTTCTGATTGTGAAGGATGGCACCCGGCGCGTTGAAGGGATCATTTCGATAGGTGATGTGTTCAGGTTCTTGTTAGGCTAG 1638 0.4249 MHTGCPLLLPTNANQNSFISNFQTSLDGMHLNFFFLFVSGVANFSVWFSIAKKVHYTHCTRDCQREFGIMSGSMASLVARPPLVPKRFVWPYGGRTVFLCGSFTRWQAIIPMSRMDSCPDVFEVLCSLIPGYHQYNFYVDGKWRHDEQQPFVNEIFGVVNSIYLLRQPDILSTLLSAETPGGGHMEVDNSASGPVEANPMMSESDLLISRHRISTFLSRSTAYDLLPESGKVIALDINLSVKQALSILHEEGIYLAPICDSSTCQFVGVLNAMDFIQILKELGNHGTDLTEEQLETYTIADWREGKLLQCETNCNGRARPWNFVSAGPDECLKDVASKILQNNVATVPIIHSSSEHGSLPQLLRLASLSDILKHICRYFEHSHGFLPVLQLPVGSIPLGTWVQKMGESNIKPLAMLGPNDSLGAAMSLMIEAEVSSIPIVHDNDSLLDIYSRSDITALVKKKAYAWINLDEFSIHEALLLVQDGELLYNLPNGQRYHMCSRFDSLCKVMELLAEPGVGRVLIVKDGTRRVEGIISIGDVFRFLLG* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1463 545 ProSiteProfiles CBS domain profile. 225 289 IPR000644 -
Lja5g1463 545 Gene3D - 204 385 IPR046342 -
Lja5g1463 545 Pfam CBS domain 411 458 IPR000644 -
Lja5g1463 545 Pfam CBS domain 496 544 IPR000644 -
Lja5g1463 545 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 74 545 - -
Lja5g1463 545 Gene3D - 395 545 IPR046342 -
Lja5g1463 545 Gene3D Immunoglobulins 80 170 IPR013783 -
Lja5g1463 545 SMART cbs_1 412 460 IPR000644 -
Lja5g1463 545 SMART cbs_1 495 544 IPR000644 -
Lja5g1463 545 SMART cbs_1 322 376 IPR000644 -
Lja5g1463 545 SMART cbs_1 231 280 IPR000644 -
Lja5g1463 545 SUPERFAMILY E set domains 82 163 IPR014756 -
Lja5g1463 545 Pfam Glycogen recognition site of AMP-activated protein kinase 84 168 IPR032640 -
Lja5g1463 545 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 74 545 - -
Lja5g1463 545 SUPERFAMILY CBS-domain pair 410 544 IPR046342 -
Lja5g1463 545 CDD E_set_AMPKbeta_like_N 87 162 - -
Lja5g1463 545 ProSiteProfiles CBS domain profile. 409 471 IPR000644 -
Lja5g1463 545 SUPERFAMILY CBS-domain pair 211 382 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1463 Lja-Chr5 15444301 15463764 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1463 - - gmx:100790062 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0298 1 2517387 2525059 Lja5g1463 5 15444301 15463764 PCT