Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1460 ATGTCACTTTCTCAACCATGCAAGAAATTGAGAACCGGTAAAAGCAAAGATGTTGGAAAAAGCCCTGAATTGAGAAAGCGTAAAAAAGTCCAAGTTGAAGATGATGTAGGAGGAAGCACTGAACGTGCCACCTTCGTGGTTGAGCTGCAACCTTCCAGTATTGATAGATATTCCTTGATTAAGCATGGGATGACATATGTTGTTATGAAGCGCACACTTTCAAGATACAACAAATGTAAGGACTCTTCAGAGGCAGAAGTAGTGGAACCTAAAACGGAGGAACTCTGTTTAACAGAGAAGGAAGATTCTAAGATGGTGGATATTCTTAAAGATGAAATTGCAAAGCTAGAAACAAAGCAATTACGGCTTCAGGGTAAGGACTTAACTGGATTGGGCTTAAAGGAACTGCAACATCTAGAGCAGCAACTTAATGAAGGTTTATCGTCTGTAAAGGAGAGGAAGGAGGAATTGCTTATGGAGCAACTGGAACAGTCAAGAGTTCAGGTTGCCGACTGA 516 0.4109 MSLSQPCKKLRTGKSKDVGKSPELRKRKKVQVEDDVGGSTERATFVVELQPSSIDRYSLIKHGMTYVVMKRTLSRYNKCKDSSEAEVVEPKTEELCLTEKEDSKMVDILKDEIAKLETKQLRLQGKDLTGLGLKELQHLEQQLNEGLSSVKERKEELLMEQLEQSRVQVAD* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1460 171 MobiDBLite consensus disorder prediction 10 36 - -
Lja5g1460 171 Coils Coil 133 156 - -
Lja5g1460 171 Coils Coil 106 126 - -
Lja5g1460 171 MobiDBLite consensus disorder prediction 1 38 - -
Lja5g1460 171 ProSiteProfiles K-box domain profile. 99 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja5g1460 171 PANTHER MADS BOX PROTEIN 61 169 - -
Lja5g1460 171 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 61 169 - -
Lja5g1460 171 Pfam K-box region 103 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1460 Lja-Chr5 15428776 15431166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1460 69 168 MADS-box Gene Family AT5G13790 52.000 2.15e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1460 - - gmx:547732 140.969