Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1459 ATGGATTCGTTTGATCCTGATGGTAATGGGAAGGAGGAGAGTTTGCCGTTGCCACCGCCACCTCCAGTTCTCCCTTCCGATGTGGTACCTCTTAAAGCAGAGGAGGTGCTCCCTGCTGCTCCACCTCCTGAACCGGTGAAGAAGAAAACACCGGCGCGTCTTCCAATAGCTAGACGTGGTCTGGGAACTAAAGGGACTAAAATTCCACTTCTAACCAACCACTTCAAAGTTACTTGCACCAACAATGATGGACACTTCTTCCATTATAGTGTGAATTTTACCTATGAAGATGGGCGCCCTGTGGAGGGTAAGGGTGTAGGGAGGAAGATAATGGACAAGGTGCAAGAGACTTATCAGTCTGACTTGAATGGCATGGACTTTGCGTATGATGGGGAGAAGAGTCTGTTCACTATTAGCTCCCTTCCTAAAAACAAGCTTGAGTATGAAGTTGTTCTGGAGGATGTCACATCGAACAGGAACAATGGCAATTGTAGCCCTCCAAATGGTCATGGGGAGGACAATGAAACTGACAAAAAGAGGATGCGGCGTCCTTATCGTGCCAAGACGTTTAAAGTTGAGATTAGCTATGCTGCCAAAATTCCAATGCATGCCATTGCCAATGCCTTACGTGGGCAGGAATCTGAAAACTTCCAAGAAGCCATTCGAGTGCTAGATATCATATTGAGGCAGCATGCTGCAAAGCAAGGCTGCCTGCTTGTACGCCAAAACTTCTTTCACAATGATCCCAAGAACTTTGCTGATGTTGGAGGCGGTGTTCTAGGCCGTAGAGGATTCCAATCTAGTTTTAGAACTACACAGAGTGGACTATCTCTGAACATAGATGTCTCCACTACAATGATAGTTCAACCAGGGCCAGTGGTAGACTTCTTAATTTCCAATCAAAATGTCAGAGATCCTTTTCAACTTGATTGGACCAAGGCCAAAAGGACGCTAAAAAACCTGAGGATTAAAACCTACCCTTCTAATCAAGAGTTCAAAATTACTGGATTCAGTGAAAACCCCTGCAAAGAACATACCTTTTCTATGACGAAAAAAGGTGATGGTGATGATAGTGAGGAAGTTACTGTCTATGATTATTTTGTTAATACTCGTAAGATAGAACTCCACTACTCTGGTGACCTGCCATGTATTAATGTGGGGAAGCCTAAACGGCCCACATTTTTCCCCACTGAGCTCTGTGAACTGGTATCCCTGCAACGATATACCAAAGCTTTGACCACACTTCAACGGTCCTCATTGGTGGAAAAGTCCAGGCAGAAGCCACAAGAGCGAATGAATGTTTTGACCGATGCACTGAAAATTAGCAACTATGGTGCTGAACCTTTGCTAAAGAATTGTGGAATTTCTATAAGCAATGGCTTTACCCAAGTCGAGGGTCGTGTTTTGCCTGCTCCAAGGTTGAAGTTTGGCAATGGTGAAGATATGAATCCTAGGAATGGAAGATGGAATGTTGCCAGGATGAAATTTGTGCGGCCAACCGCAAAGGTAGAAAGATGGGCTGTGGCCAACTTTTCTGCACGTTGTGATGTTCAAGGACTTGTGAGAGATCTAATGAGAATTGCAGATATGAAAGGAATTCAAATGGACCAACCATTTGATGTGTTTGCTGAAAGTCCTCAGTTTAGGCGTGCCCCACCTATGGTTAGAGTGGAGAAGATGTTTGAGGACATCCAATCGAAACTTCCTGGGGCTCCTCAGTTCCTTCTCTGTTTGCTTCCTGATAGGAAAAACTGTGAAATTTATGTTAATCAGTGCATGTGTCCTTTAAGGGTCAATGACCAGTATCTTACAAATATTATGTTGAAGATAAATGCTAAGCTTGGTGGGTTGAATGCATTGTTAAGTGTTGAATTGTCTCCTTCTCTTCCCATTGTTTCCAAAGCCCCCACCCACATTCTAGGCATGGATGTGTCTCATGGCTCACCGGGAGAGACTGATATACCTTCAATCGTTGCGGTGGTCAGCTCCAGAGAGTGGCCTCTGATATCAAAGTATAGGGCTTGTGTTCGTACCCAGTCTGCAAAGGTTGAAATGATAGATAACTTGTTCAAGCCAGTGTCAGAAAAGGAAGATGAAGGCATCATGAGGGAACTTTTGCTTGATTTCTATGTAAGTTCTGGGAAGAGAAAGCCAGACAATATAATCATTTTCAGGGATGGAAAGAACCACCACACAAGGTTCTTCCAGCCTGGCTCACCTGACAATGTCCCACCTGGAACTATTATTGACAATAAAATTGGCCATCCCAGAAATTATGATTTCTACCTTTGTGCCCATGCTGGAATGATGGGTACCAGTAGGCCTACACACTACCATGTGCTGCTAGATCAGGCTGGTTTCTCTCCTGATGAACTGCAGGAGCTTGTACACAGTCTATCATATGTGTATCAGAGGAGAACCACTGCAGTTTCTGTTGTTGCTCCTATATGCTATGCCCACTTGGCTGCAACCCAGTTGGGCCAGTTCATGAAATTCGAGGACAAATCCGAGACATCATCAAGCCATGGTGGACTGAGTGCTGCTGGAGTTGTTCCTGTCCCTCAATTGCCCAAATTGCAGGAAAATGTTTGCAACTCAATGTTCTTTGTTTAA 2613 0.4443 MDSFDPDGNGKEESLPLPPPPPVLPSDVVPLKAEEVLPAAPPPEPVKKKTPARLPIARRGLGTKGTKIPLLTNHFKVTCTNNDGHFFHYSVNFTYEDGRPVEGKGVGRKIMDKVQETYQSDLNGMDFAYDGEKSLFTISSLPKNKLEYEVVLEDVTSNRNNGNCSPPNGHGEDNETDKKRMRRPYRAKTFKVEISYAAKIPMHAIANALRGQESENFQEAIRVLDIILRQHAAKQGCLLVRQNFFHNDPKNFADVGGGVLGRRGFQSSFRTTQSGLSLNIDVSTTMIVQPGPVVDFLISNQNVRDPFQLDWTKAKRTLKNLRIKTYPSNQEFKITGFSENPCKEHTFSMTKKGDGDDSEEVTVYDYFVNTRKIELHYSGDLPCINVGKPKRPTFFPTELCELVSLQRYTKALTTLQRSSLVEKSRQKPQERMNVLTDALKISNYGAEPLLKNCGISISNGFTQVEGRVLPAPRLKFGNGEDMNPRNGRWNVARMKFVRPTAKVERWAVANFSARCDVQGLVRDLMRIADMKGIQMDQPFDVFAESPQFRRAPPMVRVEKMFEDIQSKLPGAPQFLLCLLPDRKNCEIYVNQCMCPLRVNDQYLTNIMLKINAKLGGLNALLSVELSPSLPIVSKAPTHILGMDVSHGSPGETDIPSIVAVVSSREWPLISKYRACVRTQSAKVEMIDNLFKPVSEKEDEGIMRELLLDFYVSSGKRKPDNIIIFRDGKNHHTRFFQPGSPDNVPPGTIIDNKIGHPRNYDFYLCAHAGMMGTSRPTHYHVLLDQAGFSPDELQELVHSLSYVYQRRTTAVSVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGLSAAGVVPVPQLPKLQENVCNSMFFV* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1459 870 Gene3D - 468 622 - -
Lja5g1459 870 SUPERFAMILY Ribonuclease H-like 559 829 IPR012337 -
Lja5g1459 870 MobiDBLite consensus disorder prediction 1 52 - -
Lja5g1459 870 MobiDBLite consensus disorder prediction 13 27 - -
Lja5g1459 870 Gene3D - 629 727 IPR036397 GO:0003676
Lja5g1459 870 Pfam Argonaute linker 1 domain 240 288 IPR014811 -
Lja5g1459 870 Pfam Mid domain of argonaute 483 537 IPR032473 -
Lja5g1459 870 CDD PAZ_argonaute_like 290 403 - -
Lja5g1459 870 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 728 869 - -
Lja5g1459 870 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 2 727 - -
Lja5g1459 870 SMART DUF1785_2 238 290 IPR014811 -
Lja5g1459 870 ProSiteProfiles Piwi domain profile. 599 831 IPR003165 GO:0003676
Lja5g1459 870 Pfam N-terminal domain of argonaute 66 228 IPR032474 -
Lja5g1459 870 SMART Piwi_a_2 574 831 IPR003165 GO:0003676
Lja5g1459 870 SUPERFAMILY PAZ domain 285 444 IPR036085 GO:0005515
Lja5g1459 870 Pfam Argonaute linker 2 domain 430 476 IPR032472 -
Lja5g1459 870 MobiDBLite consensus disorder prediction 157 180 - -
Lja5g1459 870 Pfam Piwi domain 728 831 IPR003165 GO:0003676
Lja5g1459 870 Pfam Piwi domain 590 727 IPR003165 GO:0003676
Lja5g1459 870 Gene3D - 728 870 IPR036397 GO:0003676
Lja5g1459 870 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 728 869 - -
Lja5g1459 870 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 727 - -
Lja5g1459 870 ProSiteProfiles PAZ domain profile. 315 404 IPR003100 GO:0005515
Lja5g1459 870 Pfam PAZ domain 294 420 IPR003100 GO:0005515
Lja5g1459 870 Gene3D paz domain 284 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1459 Lja-Chr5 15423100 15425842 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1459 58 869 Eukaryotic Initiation Factors Gene Family AT5G43810 32.553 1.00e-136 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1459 K11593 - gmx:100820376 1432.16