Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1458 ATGAAAGATATTTTGCTTTTTCGCCTATTTATAGGCGGGCGAAATCCCGGGAAAATGAAAATTTCGCGATTCCGATTTTTGCAGCACGTTCACCAAGGAATTCTAAGAGAGATTCTGGAGGTGCTCCCTGCTGCTCCACCTCCTGAACCGGTGAAGAAGAAAACACCGGCGCGTCTTCCAATAGCTAGACGTGGTCTGGGAACTAAAGGGACGAAAATTCAACTTCTAACCAACCACTTCAAAGTTACTTGCACCAACAATGATGGACACTTCTTCCATTATAGTGTGAATTTTACCTATGAAGATGGGCGCCCTGTGGAGGGTAAGGGTGTAGGGAGGAAGATAATGGACAAGGTGCAAGAGACTTATCAGTCTGACTTGAATGGCATGGACTTTGCGTATGATGGGGAGAAGAGTCTGTTCACTATTGGCTCCCTTCCTAAAAACAAGCTTGAGTATGAAGTTGTTCTGGAGGATGTCACATCGAACAGGAACAATGGCAATTGTAGCCCTCCAAATGAAGCCATTCGAGTGCTAGATATCATATTGAGGCAGCATGCTGCAAAGCAAGGCTGCCTGCTTGTACGCCAAAACTTCTTTCACAATGATCCCAAGAACTTTGCTGATGTTGGAGGCGGTGTTCTAGGATGTAAAGGATTCCATTCTAGTTTTAGAACTACACAGAGTGGACTATCTCTGAACATAGATATCTCCACTACAATGATAGTTCAACCAGGGCCAGTGGTAGACTTCTTAATTTCCAATCAAAATGTCAGAGATCCTTTTCAACTTGATTGGACCAAGGCCAAAAGGACGCTAAAAAACCTGAGGATTAAAACCTACCCTTCTAATCAAGAGTTCAAAATTACTGGATTCAGTGAAAACCCCTGCAAAGAACATACCTTTTCTATGACGAAAAAAGGTGATGGTGATGATAGTGAGGAAGTTACTGTCTATGATTGTTTTGTTAATACTCGTAAGATAGAACTCCGCTACTCTGGTGACCTGCCATGTATTAATGTGGGGAAGCCTAAACGGCCCACATTTTTCCCCACTGAGCTCTGTGAACTGGTATCCCTGCAACGATATACCAAAGCTTTGACCACACTTCAATGGTCCTCATTGGTGGAAAAGTCCAGGCAGAAGCCACAAGAGCGAATGAATAATTGTGGAATTTCTATAAGCAATGGCTTTGCCCAAGTCGAGGGTCGTGTTTTGCCTGCTCCAAGGTTGAAGTTTGGCAATGGTGAAGATATGAATCCTAGGAATGGAAGATGGAATGTTGCCAGGATGAAATTTGTGCGGCCAACCGCAAAGGTAGAAAGATGGGATGTGGCCAACTTTTCTGCACGTTGTGATGTTCAGGGACTTGTGAGAGATCTAATGAGAATTACAGATATGAAAGGAATTCAAATGGACCAACCATTTGATGTGTTTGCTGAAAGTCCTCAGTTTAGGCGTGCCCCACCTATGGTTAGAGTGGAGAAGATGTTTGAGGACATCCAATCGAAACTCCCTGGGGCTCCTCAGTTCCTTCTCTGTTTGCTTCCTGATAGGAAAAACTGTGAAATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGACTATGGAATAGTTAATCAGTGCATGTGTCCTTTAAGGGTCAATGACCAGTATCTGACAAATATTATGTTGAAGATAAATGCTAAGCTTGGTGGGTTGAATTCATTGTTAAGTGTTGAATTGTCTCCTTCTTTTCCCATTGTTTCCAAAGCCCCCACCCACATTCTAGGCATGGATGTGTCTCATGGCTCACCGGGACAGACTGATATACCTTCAATCTCTGCGGTGGTCAGCTTCAGAGAGTGGCCTCTGATATCAAAGTATAGGGCTTGTGTTCGTACCCAGTATGCAAAGGTTGAAATGATAGATAACTTGTTCAAGCAAGTGTCAGAAAAGGAAGATGAAGGCATCATGAGGGAACTTTTGCTTGATTTCTATGTAAGTTCTGGGAAGAGAAAGCCAGACAATATAATCATTTTCAGGGATGGAGTCACCAAATTCGTGGTAATTGTTGCTCAGAAGAACCACCACACAAGGTTCTTCCAGCCTGGCTCACCTGACAATGTCCCACCTGGAACTATTATTGACAATAAAATTGGCCATCCCATAAATTATGATTTCTACCTTTGTGCCCATGCTGGAATGATGGGTACCAGTAGGCCTACACACTACCATGTGCTGCTAGATGAGGCTGGTTTCTCTCCTGATGAACTGCAGGAGCTTGTACACAGTCTATCATATGTGTATGAGAGGAGCACCACTGCAATTTCTGTTGTTGCTCCTATATGCTATGCCCACTTGGCTGTAACCCAGTTGGGCCAGTTCATGAAATTCGAGGACAAATCTGAGACATCATCAAGCCATGGTGGACTGAGTGCTGCTGGAGCTGTTCCTGTCCCTCAATTGCCCAAATTGCAGGAAAATGTTTGCAACTCAATGTTCTTTGTTTAA 2493 0.4352 MKDILLFRLFIGGRNPGKMKISRFRFLQHVHQGILREILEVLPAAPPPEPVKKKTPARLPIARRGLGTKGTKIQLLTNHFKVTCTNNDGHFFHYSVNFTYEDGRPVEGKGVGRKIMDKVQETYQSDLNGMDFAYDGEKSLFTIGSLPKNKLEYEVVLEDVTSNRNNGNCSPPNEAIRVLDIILRQHAAKQGCLLVRQNFFHNDPKNFADVGGGVLGCKGFHSSFRTTQSGLSLNIDISTTMIVQPGPVVDFLISNQNVRDPFQLDWTKAKRTLKNLRIKTYPSNQEFKITGFSENPCKEHTFSMTKKGDGDDSEEVTVYDCFVNTRKIELRYSGDLPCINVGKPKRPTFFPTELCELVSLQRYTKALTTLQWSSLVEKSRQKPQERMNNCGISISNGFAQVEGRVLPAPRLKFGNGEDMNPRNGRWNVARMKFVRPTAKVERWDVANFSARCDVQGLVRDLMRITDMKGIQMDQPFDVFAESPQFRRAPPMVRVEKMFEDIQSKLPGAPQFLLCLLPDRKNCEIYGPWKKKNLADYGIVNQCMCPLRVNDQYLTNIMLKINAKLGGLNSLLSVELSPSFPIVSKAPTHILGMDVSHGSPGQTDIPSISAVVSFREWPLISKYRACVRTQYAKVEMIDNLFKQVSEKEDEGIMRELLLDFYVSSGKRKPDNIIIFRDGVTKFVVIVAQKNHHTRFFQPGSPDNVPPGTIIDNKIGHPINYDFYLCAHAGMMGTSRPTHYHVLLDEAGFSPDELQELVHSLSYVYERSTTAISVVAPICYAHLAVTQLGQFMKFEDKSETSSSHGGLSAAGAVPVPQLPKLQENVCNSMFFV* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1458 830 ProSiteProfiles Piwi domain profile. 511 791 IPR003165 GO:0003676
Lja5g1458 830 SMART DUF1785_2 193 245 IPR014811 -
Lja5g1458 830 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 679 829 - -
Lja5g1458 830 SUPERFAMILY Ribonuclease H-like 496 789 IPR012337 -
Lja5g1458 830 Pfam Argonaute linker 1 domain 195 243 IPR014811 -
Lja5g1458 830 ProSiteProfiles PAZ domain profile. 270 359 IPR003100 GO:0005515
Lja5g1458 830 SMART Piwi_a_2 511 791 IPR003165 GO:0003676
Lja5g1458 830 Gene3D - 680 830 IPR036397 GO:0003676
Lja5g1458 830 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 46 170 - -
Lja5g1458 830 Gene3D - 405 572 - -
Lja5g1458 830 Gene3D paz domain 239 363 - -
Lja5g1458 830 Pfam Piwi domain 680 791 IPR003165 GO:0003676
Lja5g1458 830 Pfam Piwi domain 512 678 IPR003165 GO:0003676
Lja5g1458 830 Pfam N-terminal domain of argonaute 71 163 IPR032474 -
Lja5g1458 830 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 46 170 - -
Lja5g1458 830 CDD PAZ_argonaute_like 245 358 - -
Lja5g1458 830 Gene3D - 579 679 IPR036397 GO:0003676
Lja5g1458 830 Pfam Argonaute linker 2 domain 365 413 IPR032472 -
Lja5g1458 830 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 173 679 - -
Lja5g1458 830 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 679 829 - -
Lja5g1458 830 SUPERFAMILY PAZ domain 240 390 IPR036085 GO:0005515
Lja5g1458 830 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 173 679 - -
Lja5g1458 830 Pfam PAZ domain 249 372 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1458 Lja-Chr5 15240700 15244205 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1458 63 829 Eukaryotic Initiation Factors Gene Family AT5G43810 32.155 8.52e-129 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1458 K11593 - gmx:100820376 1326.61