Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1456 ATGGATTCGTTTGAACCTGATGGTAATGGGAAGGAGGAGAGTTTGCCGTTGCCACCGCCACCTCCAGTTCTCCCTTCCGATGTGGTACCTCTTAAAGCAGAGGAGGTGCTCCCTGCTGCTCCACCTCCTGAACCGGTGAAGAAGAAAACACCGGCGCGTCTTCCAATAGCTAGACGTGGTCTGGGAACTAAAGGGACGAAAATTCAACTTCTAACCAACCACTTCAAAGTTACTTGCACCAACAATGATGGACACTTCTTCCATTATAGTGGTAAGGGTGTAGGGAGGAAGATAATGGACAAGGTGCAAGAGACTTATCAGTCTGACTTGAATGGCATGGACTTTGCGTATGATGGGGAGAAGAGTCTGTTCACTTTTGGCTCCCTTCCTAAAAACAAGCTTGAGTATGAAGTTGTTCTGGAGGATGTCACATCGAACAGGAACAATGGCAATTGTAGCCCTCCAAATGGTCATGGGGAGGACAATGAAACTGACAAAAAGAGGATCTATGCTGCCAAAATTCCAATGCAGGCCATTGCCAATGCCTTACGTGGGCAGGAATCTGAAAACTTCCAAGAAGCCATTCGAGTGCTAGATATCATATTGAGGCAGCATGCTGCAAAGCAAGGCTGCCTGCTTGTACGCCAAAACTTCTTTCACAATGATCCCAAGAACTTTGCTGATGTTGGAGGCGGTGTTCTAGGATGTAAAGGATTCCATTCTAGTTTTAGAACTACACAGAGTGGACTATCTCTGAACATAGATATCTCCACTACAATGATAGTTCAACCAGGGCCAGTGGTAGACTTCTTAATTTCCAATCAAAATGTCAGAGATCCTTTTCAACTTGATTGGACCAAGGCCAAAAGGACGCTAAAAAACCTGAGGATTAAAACCTACCCTTCTAATCAAGAGTTCAAAATTACTGGATTCAGTGAAAACCCCTGCAAAGAACATACCTTTTCTATGACGAAAAAAGGTGATGGTGATGATAGTGAGGAAGTTACTGTCTATGATTATTTTGTTAATACTCGTAATATAGAACTCCGCTACTCTGGTGACCTGCCATGTATTAATGTGGGGAAGCCTAAACGGCCCACATTTTTCCCCACTGAGCTCTGTGAACTGGTATCCCTGCAACGATATACCAAAGCTTTGACCACACTTCAACGGTCCTTATTGGTGGAAAAGTCCAGGCAGAAGCCACAAGAGCGAATGAATGTTTTGACTAATGCATTGAAAATTAGCAACTATGGTGCTGAACCTTTGCTAAAGAATTGTGGAATTTCTATAAGCAATGGCTTTACCCAAGTCGAGGGTCGTGTTTTGCCTGCTCCAAGGTTGAAGTTTGGCAATGGTGAAGATATGAATCTTAGGAATGGAAGATGGAATGTAGAAAGATGGGATGTGGCCAACTTTTCTGCACGTTGTGATGTTCAAGGACTTGTGAGAGATCTAATGAGAATTGCAGATATGAAAGGAATTCAAATGGACCAACCATTTGATGTGTTTGCTGAAAGTCCTCAATTTAGGCGTGCCCCACCTATGGTTAGAGTGGAGAAGATGTTTGAAGACATCCAATCGAAACTCCCTGGGGCTCCTCAGTTCCTTCTTTGTTTGCTTCCTGATAGGAAAAACTGTGAAATTTATGTTAATCAGTGCATGTGTCCTTTAAGGGTCAATGACCAGTATCTGACAAATATTATGTTGAAGATAAATGCTAAGCTTGGTGGGTTGAATTCATTGTTAAGTGTTGAATTGTCTCCTTCTCTTCCCATTGTTTCCAAAGCCCCCACCCACATTCTAGGCATGGATGTGTCTCATGGCTCACCGGGACAGACTGATATACCTTCAATCTCTGCGGTGGTCAGCTTCAGAGAGTGGCCTCTGATATCAAAGTATAGGGCTTGTGTTCGTACCCAGTATGCAAAGGTTGAAATGATAGATAACTTGTTCAAGCAAGTGTCAGAAAAGGAAGATGAAGGCATCATGAGGGAACTTTTGCTTGATTTCTATGTAAGTTCTGGGAAGAGAAAGCCAGACAATATAATCATTTTCAGGGATGGAAAGAACCACCACACAAGGTTCTTCCAGCCTGGCTCACCTGACAATGTCCCACCTGGAACTATTATTGACAATAAAATTGGCCATCCCATAAATTATGATTTCTACCTTTGTGCCCATGCTGGAATGATGGGTACCAGTAGGCCTACACACTACCATGTGCTGCTAGATGAGGCTGGTTTCTCTCCTGATGAACTGCAGGAGCTTGTACACAGTCTATCATATGTGTATGAGAGGAGCACCACTGCAATTTCTGTTGTTGCTCCTATATGCTATGCCCACTTGGCTGTAACCCAGTTGGGCCAGTTCATGAAATTCGAGGACAAATCTGAGACATCATCAAGCCATGGTGGACTGAGTGCTGCTGGAGCTGTTCCTGTCCCTCAATTGCCCAAATTGCAGGAAAATGTTTGCAACTCAATGTTCTTTGTTTAA 2499 0.4358 MDSFEPDGNGKEESLPLPPPPPVLPSDVVPLKAEEVLPAAPPPEPVKKKTPARLPIARRGLGTKGTKIQLLTNHFKVTCTNNDGHFFHYSGKGVGRKIMDKVQETYQSDLNGMDFAYDGEKSLFTFGSLPKNKLEYEVVLEDVTSNRNNGNCSPPNGHGEDNETDKKRIYAAKIPMQAIANALRGQESENFQEAIRVLDIILRQHAAKQGCLLVRQNFFHNDPKNFADVGGGVLGCKGFHSSFRTTQSGLSLNIDISTTMIVQPGPVVDFLISNQNVRDPFQLDWTKAKRTLKNLRIKTYPSNQEFKITGFSENPCKEHTFSMTKKGDGDDSEEVTVYDYFVNTRNIELRYSGDLPCINVGKPKRPTFFPTELCELVSLQRYTKALTTLQRSLLVEKSRQKPQERMNVLTNALKISNYGAEPLLKNCGISISNGFTQVEGRVLPAPRLKFGNGEDMNLRNGRWNVERWDVANFSARCDVQGLVRDLMRIADMKGIQMDQPFDVFAESPQFRRAPPMVRVEKMFEDIQSKLPGAPQFLLCLLPDRKNCEIYVNQCMCPLRVNDQYLTNIMLKINAKLGGLNSLLSVELSPSLPIVSKAPTHILGMDVSHGSPGQTDIPSISAVVSFREWPLISKYRACVRTQYAKVEMIDNLFKQVSEKEDEGIMRELLLDFYVSSGKRKPDNIIIFRDGKNHHTRFFQPGSPDNVPPGTIIDNKIGHPINYDFYLCAHAGMMGTSRPTHYHVLLDEAGFSPDELQELVHSLSYVYERSTTAISVVAPICYAHLAVTQLGQFMKFEDKSETSSSHGGLSAAGAVPVPQLPKLQENVCNSMFFV* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1456 832 Pfam PAZ domain 268 393 IPR003100 GO:0005515
Lja5g1456 832 SMART Piwi_a_2 536 793 IPR003165 GO:0003676
Lja5g1456 832 Pfam N-terminal domain of argonaute 66 202 IPR032474 -
Lja5g1456 832 MobiDBLite consensus disorder prediction 13 27 - -
Lja5g1456 832 Gene3D - 690 832 IPR036397 GO:0003676
Lja5g1456 832 SUPERFAMILY Ribonuclease H-like 521 791 IPR012337 -
Lja5g1456 832 Pfam Argonaute linker 1 domain 214 262 IPR014811 -
Lja5g1456 832 ProSiteProfiles Piwi domain profile. 561 793 IPR003165 GO:0003676
Lja5g1456 832 Pfam Piwi domain 690 793 IPR003165 GO:0003676
Lja5g1456 832 Pfam Piwi domain 552 689 IPR003165 GO:0003676
Lja5g1456 832 Gene3D paz domain 258 382 - -
Lja5g1456 832 SMART DUF1785_2 212 264 IPR014811 -
Lja5g1456 832 SUPERFAMILY PAZ domain 259 418 IPR036085 GO:0005515
Lja5g1456 832 Gene3D - 591 689 IPR036397 GO:0003676
Lja5g1456 832 CDD PAZ_argonaute_like 264 377 - -
Lja5g1456 832 Pfam Argonaute linker 2 domain 404 450 IPR032472 -
Lja5g1456 832 ProSiteProfiles PAZ domain profile. 289 378 IPR003100 GO:0005515
Lja5g1456 832 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 690 831 - -
Lja5g1456 832 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 689 - -
Lja5g1456 832 Gene3D - 442 584 - -
Lja5g1456 832 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 2 689 - -
Lja5g1456 832 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 690 831 - -
Lja5g1456 832 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1456 Lja-Chr5 14926237 14928979 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1456 58 831 Eukaryotic Initiation Factors Gene Family AT5G43810 31.621 2.14e-126 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1456 K11593 - gmx:100820376 1330.47