Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1448 ATGGAAGATCAAGATAGATTGTTGCCCATTGCAAACGTGGGACGAATCATGAAGCAAAACCTCCCTCCAAGTGCAAAGATCTCCAAAGAAGGGAAACAAATGATGCAGGAGTGTGTGACTGAATTCGTAAGTTTTGTGACAGGCGAGGCTTCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGGGATGACATCTGTTGGGCTCTCAGCTCCTTAGGGTTTGACAACTACGCTGACGCCGTTGGAAGGTACTTGCTTAAATACAGACAAGCTGAGAGGGACAAAATTATCATGAATCAAAATCAACAAATCCTGCTTGCTCCTCTAGGGTGTACTGAAAAGGATGAAAACTCTCCTGCAAATGAATCTGGATGA 381 0.4436 MEDQDRLLPIANVGRIMKQNLPPSAKISKEGKQMMQECVTEFVSFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYADAVGRYLLKYRQAERDKIIMNQNQQILLAPLGCTEKDENSPANESG* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1448 126 SUPERFAMILY Histone-fold 4 103 IPR009072 GO:0046982
Lja5g1448 126 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Lja5g1448 126 PRINTS CCAAT-binding transcription factor subunit A signature 35 53 - -
Lja5g1448 126 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Lja5g1448 126 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 105 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lja5g1448 126 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 7 71 IPR003958 -
Lja5g1448 126 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 2 105 - -
Lja5g1448 126 Gene3D Histone, subunit A 1 124 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1448 Lja-Chr5 14605500 14606192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1448 1 102 CCAAT-HAP3 Transcription Factor Family AT1G09030 74.510 1.46e-55 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja5g1448 CBFD_NFYB_HMF 5.1e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1448 K08065 - gmx:100815151 183.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1448 5 14605500 14606192 Lja5g1448 5 14605500 14606192 ECH