Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1446 ATGTCAAACATCACAAGCTGTGATAGTGGGAGCTTCTCTACAGAGAATAACAGAGGAGATAATATTGCAGTGAAGAAACAGCAACCAGAGATATTTGGTCAGTTTTATAGTCCACATTCTCATACCTCAACAACGACAACAACAACAACAAATAAAAGCAATGGTTCTAACACAAATTTGCAACCATCTGCACCTGCTAAGAGGAAAAGGAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTCATTGCTCTATCACCAACCACACTAATGGCCACAAACCGGTTCGTGTGTGAGATCTGCAACAAAGGCTTTCAAAGAGACCAAAACCTCCAACTTCATCGGCGAGGCCACAACCTGCCGTGGAAGCTGAAGCAAAGAACCACCGCAGAGGTTCGGAAGCGGGTCTACGTCTGCCCTGAACCTTCATGTGTCCACCACAGCCCGGCAAGAGCACTGGGCGACCTCACTGGCATTAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAAAAATGGAAATGTGATAAGTGCTCCAAGAAGTACGCTGTTCAATCTGACTGGAGAGCACACTACAAAATATGTGGCACGAAGGAATATAAGTGTGACTGTGGAACCATCTTTTCCAGAAGAGATAGCTTCATCACCCACAGAGCTTTCTGCGACGCACTGTCTGAAGAGAACCACAAAGCCAATGAACAAGGACAATTGCCTCCAAACATAATGCAACCAATCCCAATCAACACCAATCCAAACCCACAAATGCCTCATGGGGCACTAGAATTCAACCATTCAGATCAAAAGCATCCATCACCATTACCATTACCACTCCCTCACGAGCTCAACATTCCCATGTTCTCTCGAAACAGTACTCCATCCACAAACATCTTCGATGAAAATGGCCTCCACATGGCGGCTGCAGCAGGCTCACCCCACATGTCCGCCACAGCGCTGCTTCAAAAAGCAGCACAAATGGGCGCAACCGTGAGCGAAGGCGCCCACACAAACATGGCACCGCCGCCACCATTCAGTGCAGCAGCGGCGCAACAACAACAGCAACTGCGGCCAGATGGGCACTCCTTCATGAACCAGCTGTACATGCAACAGGGCATGTACAATAATTTCAATGGTGGTGGAATGAATGGCGTGGATATGTTTAATGCTATATTGGATCAAAGCAAGGCTTTATCGAAGATCATAGAACAGAACAGTAGTCAAAGCAATAACAATAATACTGGAGTTTCAGTTTCTTCAGCAAATGGTGGGTCGAGTAATGTTATTAACATTGGTGAAAGTAAAGGAAGCGAGGAGGATGTAATGACTCTGGACTTGTTGGGGATAGGAGGAGGTGGTGGTGGTGTTAGTGAATGTGGTGGTGTGCATGAGAATTTCTTTGGTGGTACACAACAAACAGAAGCTGCTACTGCTGCTGCTGAAGATGAGGTTTGGAGAAATTGGTCCACCAAGAATGCAGGGTTTGAATTTTCAGCAACAAGCAACATTTGA 1503 0.4651 MSNITSCDSGSFSTENNRGDNIAVKKQQPEIFGQFYSPHSHTSTTTTTTTNKSNGSNTNLQPSAPAKRKRSLPGNPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTAEVRKRVYVCPEPSCVHHSPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWRAHYKICGTKEYKCDCGTIFSRRDSFITHRAFCDALSEENHKANEQGQLPPNIMQPIPINTNPNPQMPHGALEFNHSDQKHPSPLPLPLPHELNIPMFSRNSTPSTNIFDENGLHMAAAAGSPHMSATALLQKAAQMGATVSEGAHTNMAPPPPFSAAAAQQQQQLRPDGHSFMNQLYMQQGMYNNFNGGGMNGVDMFNAILDQSKALSKIIEQNSSQSNNNNTGVSVSSANGGSSNVINIGESKGSEEDVMTLDLLGIGGGGGGVSECGGVHENFFGGTQQTEAATAAAEDEVWRNWSTKNAGFEFSATSNI* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1446 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Lja5g1446 500 MobiDBLite consensus disorder prediction 402 423 - -
Lja5g1446 500 SUPERFAMILY beta-beta-alpha zinc fingers 95 192 IPR036236 -
Lja5g1446 500 MobiDBLite consensus disorder prediction 1 79 - -
Lja5g1446 500 Pfam Zinc-finger of C2H2 type 96 118 - -
Lja5g1446 500 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Lja5g1446 500 MobiDBLite consensus disorder prediction 33 65 - -
Lja5g1446 500 Gene3D Classic Zinc Finger 150 231 - -
Lja5g1446 500 MobiDBLite consensus disorder prediction 1 23 - -
Lja5g1446 500 SMART c2h2final6 137 167 IPR013087 -
Lja5g1446 500 SMART c2h2final6 96 118 IPR013087 -
Lja5g1446 500 SMART c2h2final6 172 192 IPR013087 -
Lja5g1446 500 Gene3D Classic Zinc Finger 75 142 - -
Lja5g1446 500 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 449 - -
Lja5g1446 500 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 36 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1446 Lja-Chr5 14538768 14544031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1446 53 332 IDZ Gene Family AT3G50700 55.183 3.93e-113 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g1446 zf-C2H2 0.005 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1446 - - gmx:100785295 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1446 5 14538768 14544031 Lja5g1446 5 14538768 14544031 ECH
Lja1g1091 1 10888336 10891988 Lja5g1446 5 14538768 14544031 PCT
Lja1g0302 1 2580006 2583917 Lja5g1446 5 14538768 14544031 PCT