Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1442 ATGGATCACGCTCGATCGAACGAAGAAGGTTCCGGGATTCCAGACGATTTGCGATGCAAGAGGTCCGACGGGAAGCAATGGAGGTGCACGGCGATGTCTATGCCGGACAAGACGGTCTGCGAGAAGCACTACATCCAGGCAAAGAAGAGAGCGGCCAATTCCGCCATGAGGGCCAATCTCAAGAAAGCCAAGAGGAAATCCATGTCGCTTGGTGAGTCTGATGTCTATTTGGAGAGCAAGAGTGACGATTTCGATGCCCCTCTTTCCACTACCTTCAACAACAACAACAACCACTCTTCCTCCTCTGGGAGGAAGCTCTTTGATAAGGTTTCCAAGAACCAGTTTCGTTACACGCCTGACCCTGATAAATTGAGACGCGGCGCCGCGACCCGTCGTGCTCCTAAGCCTGCTACTGGTGGTGATGATTCCCCTGAACGTGGTGTTGATGAAGAGAATTGGGCTTCGGAATCGCGGGCGAACCGGAGCTTGGATGCTAATGCCACTACTGAATATTCTGACGGAACCTCGGATTCTTCTCAAGAAACCGGTGGGCAGACTTGCCATCATTGCCGGAGGAACGATAGAGAGCAAGTTACTTGGTGCCTTAAATGTGATAGAAGAGGATACTGTGATAGCTGTATATCAACATGGTACTCAAACATTTCATTGGATGAAATTCAGAGGATATGTCCTGCATGCCGTGGTATATGTAATTGTAAAGTTTGCTTACGTAGTGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTACTAGATAAGTTACAGTATCTTCACCTGCTGCTCTCATCAGTTCTTCCTGTAGTGAAGCAGATCCATCGCGAACAGTGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCGAGGACAAAATTGAATGCAGATGAACAGATGTGCTGCAATTTATGTAGAGTACCTATCACTGATTATCACCGACGCTGTCCAAGTTGCTCATATGATTTGTGCCTCAATTGTTGTCGAGATCTTCGTGAGGAAACTGTACATGACAGTAATGAACCCCCAACAGAGCAAGCAAAAACTTCTGATCGAAATATATTACATAAGTTTCCTAATTGGAGATCCAATGACAATGAAAGTATTCCATGCCCCCCTAGGGAGTATGGTGGCTGTGGTTATTCATCACTAAATTTAAGTCGGATTTTCAAGATGAATTGGGTTGCAAAATTAGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTGATGATGATAGTCCACCGGAAACTGGGTTGAACTCTCTCAAACTTTGCCACTGTTCCCAAAGGGAGGATAGTGATGATAATTATCTATATTGTCCATCATCAGAAGATCTCAAAACAGACGGGGTTGGCAATTTTAGAAAGCACTGGAAAACTGGTGAGCCCATTATCGTTAAGCAAGTATTTGATAGGTCATCAGCTTCAAGCTGGGATCCGATGGTCATATGGAGAGGTGTTTTAGAGACAGCGGAGGAGAAAATGAAAGATGAAAACAGAATGGTGAAGGCCATAAATTGCTTAGATGGGTCTGAGATTGATATCGAGCTTCATCAGTTCATGAAAGGATACTCCGAGGGACGTTTTCATGAAAATGGATGGCCACAGATATTGAAGTTGAAGGATTGGCCTTCACCAAGTGCATCTGAAGAATTTTTATTGTACCAAAGACCTGAATTTATCGGCAAACTGCCTTTAATTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAACTGCCCCATTACTCCTTGCAGAATGATGTAGGTCCCAAAATATATATATCTTATGGGATTAGTGACGAACTTGGGAGAGGTGATTCAGTGACAAATCTCCACTTCAATATGCGTGACATGGTTTACCTGTTGGTCCATACAAGTGAAGTTAAGCTGAAGGACTGGCAGAGAACTAAAATTGAAATGATGAAAAAAGCTTACAAGGAACCTGAGGCAAAAGAATCTTGTGGGGATCCACAGATATGTTCGCCTTCACCACTGAGTACAGAAAATAATGGACTGGATTTGGAATCAAACCAGATTAATTCAATTATGGATCAAGAGTCTGAAAACCATTCTAGTGCTGAAGGGACTATGGTTAATTCTGAACTTCCAATTAGACAAAATGGAGAGGTCTCTGACAATACTCATCCTGGAGTTCTTTGGGATATCTTTCGTCGGCAGGATGTTCCCAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTTGGGAAGTCAGATGACACAGGAAATGAATTTGTTACATGGCCTCTTTATGATGGAGCAATTTTTCTCGATCGACATCATAAAACAAAGTTGAAGGAAGAATTTGGAGTTGAGCCATGGTCATTTGAACAAAATTTGGGGGAGGCTATATTTGTTCCTGCTGGTTGTCCTTTCCAAGCAAGGAATGTTCAGTCAACAGTTCAGTTGGGCCTTGATTTCTTATCTCCGGAAAGCCTAGGGGAGGCTGTAAGATTGGCTGAGGAAGTTCGGTGTCTACCTAATGAACATGAAGCAAAGCTTCAAGTTTTGGAGGTCGGGAAGATATCTCTTTATGCAGCAAGTTCTGCCATCAAAGAAGTTCAAAAACTTGTACTTGACCCAAAACTTGGCTCAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCGGAGAATTATGAGAAGATGGTTAAGCGGCGGCAGATTGCTTGTGCCTGA 2760 0.4308 MDHARSNEEGSGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSMSLGESDVYLESKSDDFDAPLSTTFNNNNNHSSSSGRKLFDKVSKNQFRYTPDPDKLRRGAATRRAPKPATGGDDSPERGVDEENWASESRANRSLDANATTEYSDGTSDSSQETGGQTCHHCRRNDREQVTWCLKCDRRGYCDSCISTWYSNISLDEIQRICPACRGICNCKVCLRSDNSIKVRIREIPVLDKLQYLHLLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRVPITDYHRRCPSCSYDLCLNCCRDLREETVHDSNEPPTEQAKTSDRNILHKFPNWRSNDNESIPCPPREYGGCGYSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISDDDSPPETGLNSLKLCHCSQREDSDDNYLYCPSSEDLKTDGVGNFRKHWKTGEPIIVKQVFDRSSASSWDPMVIWRGVLETAEEKMKDENRMVKAINCLDGSEIDIELHQFMKGYSEGRFHENGWPQILKLKDWPSPSASEEFLLYQRPEFIGKLPLIQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTNLHFNMRDMVYLLVHTSEVKLKDWQRTKIEMMKKAYKEPEAKESCGDPQICSPSPLSTENNGLDLESNQINSIMDQESENHSSAEGTMVNSELPIRQNGEVSDNTHPGVLWDIFRRQDVPKVTEYLKMHWKEFGKSDDTGNEFVTWPLYDGAIFLDRHHKTKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRCLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGSEIGYGDPNLTAMVSENYEKMVKRRQIACA* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1442 919 MobiDBLite consensus disorder prediction 51 72 - -
Lja5g1442 919 Gene3D Cupin 451 858 - -
Lja5g1442 919 MobiDBLite consensus disorder prediction 115 129 - -
Lja5g1442 919 MobiDBLite consensus disorder prediction 158 186 - -
Lja5g1442 919 ProSiteProfiles Zinc finger RING-type profile. 187 234 IPR001841 -
Lja5g1442 919 Pfam JmjC domain, hydroxylase 734 828 IPR003347 -
Lja5g1442 919 MobiDBLite consensus disorder prediction 115 188 - -
Lja5g1442 919 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 182 247 IPR018866 -
Lja5g1442 919 Pfam WRC 14 54 IPR014977 -
Lja5g1442 919 ProSiteProfiles JmjC domain profile. 560 849 IPR003347 -
Lja5g1442 919 SUPERFAMILY Clavaminate synthase-like 469 856 - -
Lja5g1442 919 Coils Coil 502 522 - -
Lja5g1442 919 PANTHER JMJC DOMAIN PROTEIN JMJ24 7 908 - -
Lja5g1442 919 MobiDBLite consensus disorder prediction 138 157 - -
Lja5g1442 919 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 7 908 IPR045109 GO:0032454|GO:0033169
Lja5g1442 919 SMART cupin_9 567 849 IPR003347 -
Lja5g1442 919 ProSiteProfiles WRC domain profile. 13 57 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1442 Lja-Chr5 14517921 14524507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1442 14 54 GRF Transcription Factor Family AT3G13960 46.341 3.42e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja5g1442 JmjC 1.5e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1442 K15601 - gmx:100801287 1502.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1442 5 14517921 14524507 Lja5g1442 5 14517921 14524507 ECH