Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja5g1441 | ATGGCGGAGCAAACAACCGGAGAAACCGCACCCAAACAAACCGTCAACGAATACGAAGAAGAAATCGATGACCAGAGCTTCGAAGACCTCGGTTTGGACCCTCGTCTCGTTCGTGCCTTACTCAAGAAAGGAATCGAAAAACCCACTCCCATTCAGCGCGTCGCGTTTCCATTGATCCTGGAAGGTAAAGATGTGGTTGCTCGAGCAAAAACCGGTTCTGGAAAAACGTTCGCGTATCTTCTTCCATTGCTTCAGAAACTGTTTACTGGTAGTGAGGATAGGAAGAAGCTTGCTCCTAATGCTTTCGTTCTTGTTCCAACTCGTGAACTGTCTCAACAGGTGTATTCGGAGGTCTTGTCACTCATTGAGATATGCAAGGTTCAGCTGAAAGTTGTGCAGTTGAATAGCAATATGCTTAACAATGACTTGCAGGCGACACTGGCTGGTCCACCTGATGTTTTGATCTCGACGCCTGCTTGCGTAGCTAAGTGCTTGTCTGGCGGTGTACTGCAGGCGGCGTCCATTAATGCTTCGCTTGAAACTCTAGTTCTCGATGAGGCAGATCTTCTACTATCTTATGGGTATGAAGAGGATATAAATGCTCTTACACCTCATGTACCACGAAGTTGCCAATGTCTTCTAATGTCTGCAACATCAAGTGCTGATGTTGACAAACTAAAGAAGTTGATTCTACACAATCCCTTTGTTTTGACTTTGCCTGAAGTGGGAAATCATAAGGATGACATCATCCCAAAAAATGTTCAGCAGTTCTGGATCTCATGTCCTGCCAGTGACAAGTTGCTCTACATCCTTGCTCTATTGAAGAATGGGTTGGTTCATAAGAAAGTACTAATATTCACTAATACCATAGACATGGGTTTCAGATTGAAACTATTCTTGGAAAAGTTTTGGATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAATTCTCGTCTCCATATTCTTGAGGAATTCAATGCCGGCCTATTTGATTATCTAATTGCAACGGATGTCAGCCAGTCAAAAGAGAAGGATGAAGCACCTAAGGAAAGTAATGTTGGATCACGGAAGTCTAGAAAGCAGGCTAAGCTAAAATTAGATTCTGAATTTGGAGTAGTTAGGGGGATTGACTTTAAAAATGTATACACGGTTATAAACTTTGATATGCCTGAAAGTGTAGAAGGATACGTGCATCGAATTGGACGTACAGGAAGAGCATACAATTCTGGTACTTCTATATCTCTGGTTTCTCCAGACGAGATGGATACTCTAGAAGAAATAAGAGATTTCATTGGGGATGATGAAAACAAGGGCTCAAACTCACTTCTTGAGTTTCCCAAGCTCACCAAGAATGCAGTTGAAAACTTGCGGTATAGGGCTGAGGATACAGCAAAGAGCGTAACTAGAATTGCTGTCAGAGATTCACGAGCCCAGGACTTAAGAAATGAAATTTTGAACTCCGAAAAGTTGAAGGCACACTTTGAAACTAATCCAAGAGACCTAGACCTATTGAAACATGACAAAGTTTTGAGCAAGAACGCTCCTCCTCTACACCTTCGTAATGTCCCTGACTACCTGTTAGACAAAACAACAAAAGAGGCAAGGGACATGGTCAAGCTTGCAAGTGATGCAATGGGAAATAATAACAATCGCCGCAGGGGGGGATCCAAGAAAAAGATAAGAAAAAGCGGAGACCCTCTGAAGGCCATCTCTGCTGGGGTATCAAAAAGACCAAACAAAGGTACGAAGACTGGTGCAAGACATGGCAATAACAATGATAGTCAAAAACAGAAAAAGTTAAAAGCGTTTTGA | 1815 | 0.4259 | MAEQTTGETAPKQTVNEYEEEIDDQSFEDLGLDPRLVRALLKKGIEKPTPIQRVAFPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTGSEDRKKLAPNAFVLVPTRELSQQVYSEVLSLIEICKVQLKVVQLNSNMLNNDLQATLAGPPDVLISTPACVAKCLSGGVLQAASINASLETLVLDEADLLLSYGYEEDINALTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFVLTLPEVGNHKDDIIPKNVQQFWISCPASDKLLYILALLKNGLVHKKVLIFTNTIDMGFRLKLFLEKFWIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDVSQSKEKDEAPKESNVGSRKSRKQAKLKLDSEFGVVRGIDFKNVYTVINFDMPESVEGYVHRIGRTGRAYNSGTSISLVSPDEMDTLEEIRDFIGDDENKGSNSLLEFPKLTKNAVENLRYRAEDTAKSVTRIAVRDSRAQDLRNEILNSEKLKAHFETNPRDLDLLKHDKVLSKNAPPLHLRNVPDYLLDKTTKEARDMVKLASDAMGNNNNRRRGGSKKKIRKSGDPLKAISAGVSKRPNKGTKTGARHGNNNDSQKQKKLKAF* | 605 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja5g1441 | 604 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 249 | 433 | IPR027417 | - | |
| Lja5g1441 | 604 | MobiDBLite | consensus disorder prediction | 342 | 361 | - | - | |
| Lja5g1441 | 604 | SMART | ultradead3 | 44 | 257 | IPR014001 | - | |
| Lja5g1441 | 604 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 56 | 237 | IPR014001 | - | |
| Lja5g1441 | 604 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Lja5g1441 | 604 | Gene3D | - | 2 | 239 | IPR027417 | - | |
| Lja5g1441 | 604 | CDD | DEADc_DDX56 | 32 | 239 | - | - | |
| Lja5g1441 | 604 | PANTHER | RNA HELICASE | 10 | 550 | - | - | |
| Lja5g1441 | 604 | SMART | helicmild6 | 294 | 408 | IPR001650 | - | |
| Lja5g1441 | 604 | Coils | Coil | 478 | 498 | - | - | |
| Lja5g1441 | 604 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 25 | 53 | IPR014014 | GO:0003724 | |
| Lja5g1441 | 604 | MobiDBLite | consensus disorder prediction | 542 | 604 | - | - | |
| Lja5g1441 | 604 | Pfam | DEAD/DEAH box helicase | 49 | 226 | IPR011545 | GO:0003676|GO:0005524 | |
| Lja5g1441 | 604 | PANTHER | ATP-DEPENDENT RNA HELICASE DDX56-RELATED | 10 | 550 | - | - | |
| Lja5g1441 | 604 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 17 | 238 | IPR027417 | - | |
| Lja5g1441 | 604 | Gene3D | - | 243 | 448 | IPR027417 | - | |
| Lja5g1441 | 604 | CDD | SF2_C_DEAD | 254 | 417 | - | - | |
| Lja5g1441 | 604 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 266 | 454 | IPR001650 | - | |
| Lja5g1441 | 604 | Pfam | Helicase conserved C-terminal domain | 265 | 408 | IPR001650 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja5g1441 | Lja-Chr5 | 14509142 | 14514878 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja5g1441 | 26 | 431 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 27.384 | 3.46e-39 | 147 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja5g1441 | K14810 | - | gmx:100800749 | 965.681 |