Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1436 ATGGACGCCAACAACAACACATCTTCCGACCAAGTCATTGCAGAAATGGTTGAAATGGGTTTCAAGCATTCCACCATTCTCGAAGCCATTGAAGCAGTAGGTCCATCGATTCGCAGCGCGGTGGAGCATATTTTCAAGACTACCACCATTTCTAACCCTAACCCTAACCCTGAACCACCAACTCACACCTTCAAATCACGCAATGGGAATGCCCTGAATAAACAATCTTTGCCGCCGTCGTCGTCGTCGCATCCGAAGCCAATTGATCATTATTTCAAACCCATTGGTAAAGTCAAGAGCAAGAAAAGTGAAAATGAGGGTGTTGTTAATGATGATGCAATGAGAGCTGAAGAGTTGGATGTTACATCTGATTGGGAGCACAACAAAGTCAAGAAAAGTGAGGTTGTTATTGCTGATGATGTTGATGTAGCTCAAGATTTGGATGTAGCATCTGATTGGGAGCACACTGTGAGCAAGCTGTTGCAAAAGCATTTTGGGTTTTCAGCATTGAAAAGTTTTCAGAAGGAAGCTCTAGCTGCTTGGGTTGCAAATGAAGATTGTCTTGTTCTTGCTGCAACAGGATCTGGGAAATCTCTGTGTTTTCAGGTTCCTGCATTGTTAACTGGGAAAGTGGTGGTTGTGATTTCACCCTTGATAAGCTTGATGCAGGACCAGTGCTGGAAGCTAACAAAGCATGGGCTCAGTGCTTGCTTTCTCGGTTCTGGGCAACGTGATGATACTGTTGAAAGGAAAGCAATGAAGGGCATGTATAGTATAATATATGTTTGCCCAGAGACACTTCTGAGATTGTTGCCACAGCTGGAGAAGCTTGCAAAAGGCCGTGGAATTGCTTTGTTCGCAATTGATGAGGTGCATTGTGTTTCTAAATGGGGTCATGATTTCCGTCCAGCCTACAGAGAATTGTCTGTGTTAAGGGAAAGTTTCTGTACTAGCACGATAAAATCCCTGAAATTTGATATACCTCTGATGGCCTTGACAGCTACTTCTACAAAGAGAGTTAGAGAAGACATTTTAGAATCACTATGCATGTCAAAAGGAACAAAAGTTGTTCTCACATCATTTTTTCGACCTAATTTACGCTTCATGGTAAAGCATAGTAAAACATCACAAGCTTCTTATGAGAAAGATTTTCATGAATTGATTAAGGAATATGGTAGAGAGCAAAACATTGGTGGAAATAAAGAACCTTTCATCTCAGATGGTTCAGATGATAGTGGTTCAGATGCCAGAAGAAGCTCTGATACAGACAGTGTTTCTTCTCATGAATTGGATGACAACCAAGATAAGTATGATGACAGCAATATTAATGTAATGCTTTCAGGAAACATAGACAATCTTCAAGAGCCTTTGCAACCAGGACCAGCAATCATATATGTGCCCACCAGAAAAGAAACACTGAGAATCGCACAGTACCTATGCAAGTTTGGCGTGAAGGCTGCTGCTTACAATGCAGGGCTTAACACGTCGCATCTAAGCAGGGTTCATAAAGAGTTTCATGACAATACTTTAGAGGTTGTAGTTGCAACAATAGCATTTGGAATGGGGATTGACAAATCGAATGTCAGAAGAATCATCCACTATGGTTGGCCGCAGAGTTTGGAAGCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCATGTTGCACAAGAAAGCCATCACTTTTGCCAAGTCGTAGAAGTGATGATCAGATAAAACAAGCATATATTTTGCTGTCTGATATTTTCAGATATGGAATGAATACTTCACATTGTCGCGCAAAGACACTTGTTGAGTACTTTGGAGAAGATTTCAGTCAACAAAAATGTCGCTTATGTGATGTGTGCATTAATGGACCACCTCAAAGGCAGAATCTAAAAGAGGAGGCCTGTGTTTTACTGCAAACAATATGTGCCCATAATGCTTCTAGCTACTCCTTGGATCCTTCATATAATGATGATATCCACTTTGGCTCCAAAAGTAGAAGGCTAGAAAAGAGACCCAGTCTTATGAAGTTAGTTAGAAATATAAGGAAGCAGTTTCAAAAGTTTGTAACCACTGATATATTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTAAAGGATACATCAAGGAAGGAGATGAGAAGACCCATGTTCAGATAAAATACCCCGAGGTAACAGAACTGGGAATGGAATTTCTGAAGTGTGAGCAAGCTTTTTATGAGTACCTTGAGGCTGATATGTTGTTTGCCAAGAAAACTAACAAACCATATTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGTCAACGCTTGGAAGCAATGCGACTTGATAGAAATCCAATGCAGCGAGTTAGAAAGCAACCAAAGAGGAAGACAAGTAAGAAAAAGAATAGAAAATTAATTCCTGTTGAAGTAATGTAG 2436 0.4105 MDANNNTSSDQVIAEMVEMGFKHSTILEAIEAVGPSIRSAVEHIFKTTTISNPNPNPEPPTHTFKSRNGNALNKQSLPPSSSSHPKPIDHYFKPIGKVKSKKSENEGVVNDDAMRAEELDVTSDWEHNKVKKSEVVIADDVDVAQDLDVASDWEHTVSKLLQKHFGFSALKSFQKEALAAWVANEDCLVLAATGSGKSLCFQVPALLTGKVVVVISPLISLMQDQCWKLTKHGLSACFLGSGQRDDTVERKAMKGMYSIIYVCPETLLRLLPQLEKLAKGRGIALFAIDEVHCVSKWGHDFRPAYRELSVLRESFCTSTIKSLKFDIPLMALTATSTKRVREDILESLCMSKGTKVVLTSFFRPNLRFMVKHSKTSQASYEKDFHELIKEYGREQNIGGNKEPFISDGSDDSGSDARRSSDTDSVSSHELDDNQDKYDDSNINVMLSGNIDNLQEPLQPGPAIIYVPTRKETLRIAQYLCKFGVKAAAYNAGLNTSHLSRVHKEFHDNTLEVVVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLACCTRKPSLLPSRRSDDQIKQAYILLSDIFRYGMNTSHCRAKTLVEYFGEDFSQQKCRLCDVCINGPPQRQNLKEEACVLLQTICAHNASSYSLDPSYNDDIHFGSKSRRLEKRPSLMKLVRNIRKQFQKFVTTDILWWRGLARILEVKGYIKEGDEKTHVQIKYPEVTELGMEFLKCEQAFYEYLEADMLFAKKTNKPYSSFSEWGKGWADPEIRRQRLEAMRLDRNPMQRVRKQPKRKTSKKKNRKLIPVEVM* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1436 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 559 IPR027417 -
Lja5g1436 811 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 160 389 IPR004589 GO:0004386|GO:0006310
Lja5g1436 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 219 IPR027417 -
Lja5g1436 811 Pfam DEAD/DEAH box helicase 173 340 IPR011545 GO:0003676|GO:0005524
Lja5g1436 811 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 178 354 IPR014001 -
Lja5g1436 811 Gene3D - 562 747 IPR036388 -
Lja5g1436 811 MobiDBLite consensus disorder prediction 396 441 - -
Lja5g1436 811 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 7 47 IPR015940 -
Lja5g1436 811 MobiDBLite consensus disorder prediction 411 438 - -
Lja5g1436 811 MobiDBLite consensus disorder prediction 48 95 - -
Lja5g1436 811 MobiDBLite consensus disorder prediction 782 811 - -
Lja5g1436 811 SMART ultradead3 166 371 IPR014001 -
Lja5g1436 811 SMART helicmild6 473 554 IPR001650 -
Lja5g1436 811 Pfam RecQ zinc-binding 573 619 IPR032284 -
Lja5g1436 811 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 4 401 - -
Lja5g1436 811 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 439 800 - -
Lja5g1436 811 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 401 - -
Lja5g1436 811 PANTHER DNA HELICASE RECQ FAMILY MEMBER 439 800 - -
Lja5g1436 811 MobiDBLite consensus disorder prediction 61 83 - -
Lja5g1436 811 SUPERFAMILY UBA-like 8 51 IPR009060 GO:0005515
Lja5g1436 811 CDD UBA 13 42 - -
Lja5g1436 811 Pfam Helicase conserved C-terminal domain 455 553 IPR001650 -
Lja5g1436 811 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 449 601 IPR001650 -
Lja5g1436 811 CDD DEXHc_RecQ 159 361 - -
Lja5g1436 811 Gene3D - 433 561 IPR027417 -
Lja5g1436 811 Gene3D - 128 362 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1436 Lja-Chr5 14482066 14487825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1436 450 554 Eukaryotic Initiation Factors Gene Family AT5G11170 25.714 1.07e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1436 K10900 - gmx:100793222 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1436 5 14482066 14487825 Lja5g1436 5 14482066 14487825 ECH