Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja5g1436 | ATGGACGCCAACAACAACACATCTTCCGACCAAGTCATTGCAGAAATGGTTGAAATGGGTTTCAAGCATTCCACCATTCTCGAAGCCATTGAAGCAGTAGGTCCATCGATTCGCAGCGCGGTGGAGCATATTTTCAAGACTACCACCATTTCTAACCCTAACCCTAACCCTGAACCACCAACTCACACCTTCAAATCACGCAATGGGAATGCCCTGAATAAACAATCTTTGCCGCCGTCGTCGTCGTCGCATCCGAAGCCAATTGATCATTATTTCAAACCCATTGGTAAAGTCAAGAGCAAGAAAAGTGAAAATGAGGGTGTTGTTAATGATGATGCAATGAGAGCTGAAGAGTTGGATGTTACATCTGATTGGGAGCACAACAAAGTCAAGAAAAGTGAGGTTGTTATTGCTGATGATGTTGATGTAGCTCAAGATTTGGATGTAGCATCTGATTGGGAGCACACTGTGAGCAAGCTGTTGCAAAAGCATTTTGGGTTTTCAGCATTGAAAAGTTTTCAGAAGGAAGCTCTAGCTGCTTGGGTTGCAAATGAAGATTGTCTTGTTCTTGCTGCAACAGGATCTGGGAAATCTCTGTGTTTTCAGGTTCCTGCATTGTTAACTGGGAAAGTGGTGGTTGTGATTTCACCCTTGATAAGCTTGATGCAGGACCAGTGCTGGAAGCTAACAAAGCATGGGCTCAGTGCTTGCTTTCTCGGTTCTGGGCAACGTGATGATACTGTTGAAAGGAAAGCAATGAAGGGCATGTATAGTATAATATATGTTTGCCCAGAGACACTTCTGAGATTGTTGCCACAGCTGGAGAAGCTTGCAAAAGGCCGTGGAATTGCTTTGTTCGCAATTGATGAGGTGCATTGTGTTTCTAAATGGGGTCATGATTTCCGTCCAGCCTACAGAGAATTGTCTGTGTTAAGGGAAAGTTTCTGTACTAGCACGATAAAATCCCTGAAATTTGATATACCTCTGATGGCCTTGACAGCTACTTCTACAAAGAGAGTTAGAGAAGACATTTTAGAATCACTATGCATGTCAAAAGGAACAAAAGTTGTTCTCACATCATTTTTTCGACCTAATTTACGCTTCATGGTAAAGCATAGTAAAACATCACAAGCTTCTTATGAGAAAGATTTTCATGAATTGATTAAGGAATATGGTAGAGAGCAAAACATTGGTGGAAATAAAGAACCTTTCATCTCAGATGGTTCAGATGATAGTGGTTCAGATGCCAGAAGAAGCTCTGATACAGACAGTGTTTCTTCTCATGAATTGGATGACAACCAAGATAAGTATGATGACAGCAATATTAATGTAATGCTTTCAGGAAACATAGACAATCTTCAAGAGCCTTTGCAACCAGGACCAGCAATCATATATGTGCCCACCAGAAAAGAAACACTGAGAATCGCACAGTACCTATGCAAGTTTGGCGTGAAGGCTGCTGCTTACAATGCAGGGCTTAACACGTCGCATCTAAGCAGGGTTCATAAAGAGTTTCATGACAATACTTTAGAGGTTGTAGTTGCAACAATAGCATTTGGAATGGGGATTGACAAATCGAATGTCAGAAGAATCATCCACTATGGTTGGCCGCAGAGTTTGGAAGCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCATGTTGCACAAGAAAGCCATCACTTTTGCCAAGTCGTAGAAGTGATGATCAGATAAAACAAGCATATATTTTGCTGTCTGATATTTTCAGATATGGAATGAATACTTCACATTGTCGCGCAAAGACACTTGTTGAGTACTTTGGAGAAGATTTCAGTCAACAAAAATGTCGCTTATGTGATGTGTGCATTAATGGACCACCTCAAAGGCAGAATCTAAAAGAGGAGGCCTGTGTTTTACTGCAAACAATATGTGCCCATAATGCTTCTAGCTACTCCTTGGATCCTTCATATAATGATGATATCCACTTTGGCTCCAAAAGTAGAAGGCTAGAAAAGAGACCCAGTCTTATGAAGTTAGTTAGAAATATAAGGAAGCAGTTTCAAAAGTTTGTAACCACTGATATATTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTAAAGGATACATCAAGGAAGGAGATGAGAAGACCCATGTTCAGATAAAATACCCCGAGGTAACAGAACTGGGAATGGAATTTCTGAAGTGTGAGCAAGCTTTTTATGAGTACCTTGAGGCTGATATGTTGTTTGCCAAGAAAACTAACAAACCATATTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGTCAACGCTTGGAAGCAATGCGACTTGATAGAAATCCAATGCAGCGAGTTAGAAAGCAACCAAAGAGGAAGACAAGTAAGAAAAAGAATAGAAAATTAATTCCTGTTGAAGTAATGTAG | 2436 | 0.4105 | MDANNNTSSDQVIAEMVEMGFKHSTILEAIEAVGPSIRSAVEHIFKTTTISNPNPNPEPPTHTFKSRNGNALNKQSLPPSSSSHPKPIDHYFKPIGKVKSKKSENEGVVNDDAMRAEELDVTSDWEHNKVKKSEVVIADDVDVAQDLDVASDWEHTVSKLLQKHFGFSALKSFQKEALAAWVANEDCLVLAATGSGKSLCFQVPALLTGKVVVVISPLISLMQDQCWKLTKHGLSACFLGSGQRDDTVERKAMKGMYSIIYVCPETLLRLLPQLEKLAKGRGIALFAIDEVHCVSKWGHDFRPAYRELSVLRESFCTSTIKSLKFDIPLMALTATSTKRVREDILESLCMSKGTKVVLTSFFRPNLRFMVKHSKTSQASYEKDFHELIKEYGREQNIGGNKEPFISDGSDDSGSDARRSSDTDSVSSHELDDNQDKYDDSNINVMLSGNIDNLQEPLQPGPAIIYVPTRKETLRIAQYLCKFGVKAAAYNAGLNTSHLSRVHKEFHDNTLEVVVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLACCTRKPSLLPSRRSDDQIKQAYILLSDIFRYGMNTSHCRAKTLVEYFGEDFSQQKCRLCDVCINGPPQRQNLKEEACVLLQTICAHNASSYSLDPSYNDDIHFGSKSRRLEKRPSLMKLVRNIRKQFQKFVTTDILWWRGLARILEVKGYIKEGDEKTHVQIKYPEVTELGMEFLKCEQAFYEYLEADMLFAKKTNKPYSSFSEWGKGWADPEIRRQRLEAMRLDRNPMQRVRKQPKRKTSKKKNRKLIPVEVM* | 812 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja5g1436 | 811 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 209 | 559 | IPR027417 | - | |
Lja5g1436 | 811 | TIGRFAM | recQ_fam: ATP-dependent DNA helicase, RecQ family | 160 | 389 | IPR004589 | GO:0004386|GO:0006310 | |
Lja5g1436 | 811 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 184 | 219 | IPR027417 | - | |
Lja5g1436 | 811 | Pfam | DEAD/DEAH box helicase | 173 | 340 | IPR011545 | GO:0003676|GO:0005524 | |
Lja5g1436 | 811 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 178 | 354 | IPR014001 | - | |
Lja5g1436 | 811 | Gene3D | - | 562 | 747 | IPR036388 | - | |
Lja5g1436 | 811 | MobiDBLite | consensus disorder prediction | 396 | 441 | - | - | |
Lja5g1436 | 811 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 7 | 47 | IPR015940 | - | |
Lja5g1436 | 811 | MobiDBLite | consensus disorder prediction | 411 | 438 | - | - | |
Lja5g1436 | 811 | MobiDBLite | consensus disorder prediction | 48 | 95 | - | - | |
Lja5g1436 | 811 | MobiDBLite | consensus disorder prediction | 782 | 811 | - | - | |
Lja5g1436 | 811 | SMART | ultradead3 | 166 | 371 | IPR014001 | - | |
Lja5g1436 | 811 | SMART | helicmild6 | 473 | 554 | IPR001650 | - | |
Lja5g1436 | 811 | Pfam | RecQ zinc-binding | 573 | 619 | IPR032284 | - | |
Lja5g1436 | 811 | PANTHER | ATP-DEPENDENT DNA HELICASE Q-LIKE SIM | 4 | 401 | - | - | |
Lja5g1436 | 811 | PANTHER | ATP-DEPENDENT DNA HELICASE Q-LIKE SIM | 439 | 800 | - | - | |
Lja5g1436 | 811 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 4 | 401 | - | - | |
Lja5g1436 | 811 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 439 | 800 | - | - | |
Lja5g1436 | 811 | MobiDBLite | consensus disorder prediction | 61 | 83 | - | - | |
Lja5g1436 | 811 | SUPERFAMILY | UBA-like | 8 | 51 | IPR009060 | GO:0005515 | |
Lja5g1436 | 811 | CDD | UBA | 13 | 42 | - | - | |
Lja5g1436 | 811 | Pfam | Helicase conserved C-terminal domain | 455 | 553 | IPR001650 | - | |
Lja5g1436 | 811 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 449 | 601 | IPR001650 | - | |
Lja5g1436 | 811 | CDD | DEXHc_RecQ | 159 | 361 | - | - | |
Lja5g1436 | 811 | Gene3D | - | 433 | 561 | IPR027417 | - | |
Lja5g1436 | 811 | Gene3D | - | 128 | 362 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja5g1436 | Lja-Chr5 | 14482066 | 14487825 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja5g1436 | 450 | 554 | Eukaryotic Initiation Factors Gene Family | AT5G11170 | 25.714 | 1.07e-06 | 49.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja5g1436 | K10900 | - | gmx:100793222 | 981.859 |