Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja5g1427 | ATGAGCAGCCGGTCAAGCCGCACAATTTATGTTGGCAACCTTCCTGGCGATATTCGCTTGAGAGAAGTAGAGGATATTTTCTACAAGTTTGGTCCTATTGTTGACATTGATTTGAAGATTCCTCCAAGACCACCAGGTTATGCTTTTGTTCAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATCTACTATCGAGATGGTTATGATTTTGATGGTTTTCGATTACGAGTTGAACTTGCACATGGTGGACGGGGTTCTTCATCATCAGTAGACCGTTACAGTAGTTATAGTGGTGGCAGCAGTAGCCGTGGAGCTTCCAGGCGTTCTGACTATCGTGTTCTGGTGACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAAGATCACATGCGTAAAGCTGGTGATGTGTGTTTCTCTCAAGTTTTCCGTGAGCGTGGAGGCATGACTGGGATAGTAGACTACACCAATTATGATGATATGAAATATGCCTTAAGGAAACTTGATGACTCAGAATTTCGAAATGCCTTCTCTCGAGCATACATACGGGTGAGGGAATATGATCGTGATTATTCTAGAAGCCCCAGTCGTGACTCTAGGAGGAGCTATTCTCGAAGCATCAGCCGCAGTCCATATTTATCACGAAGTCGAAGCCGAAGTCGTAGCTATAGTGGCAGGAGTATAAGTTTGTCTCCAACTGCAAAACGCTCTCGACGTTTGTTATCTCTTTCAAGGTCCCAGTCAAGATCCCGATCTCCAATTTCATCTCCTCGACCTCGTCAGAGTTGCAGTCCAAGCCGAAGTCCAAGGAGTCCATAA | 819 | 0.4542 | MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRAYIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSPTAKRSRRLLSLSRSQSRSRSPISSPRPRQSCSPSRSPRSP* | 273 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja5g1427 | 272 | MobiDBLite | consensus disorder prediction | 87 | 105 | - | - | |
Lja5g1427 | 272 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 111 | 189 | IPR000504 | GO:0003723 | |
Lja5g1427 | 272 | Gene3D | - | 1 | 110 | IPR012677 | - | |
Lja5g1427 | 272 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 76 | IPR000504 | GO:0003723 | |
Lja5g1427 | 272 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 113 | 175 | IPR000504 | GO:0003723 | |
Lja5g1427 | 272 | MobiDBLite | consensus disorder prediction | 82 | 105 | - | - | |
Lja5g1427 | 272 | MobiDBLite | consensus disorder prediction | 205 | 272 | - | - | |
Lja5g1427 | 272 | MobiDBLite | consensus disorder prediction | 189 | 204 | - | - | |
Lja5g1427 | 272 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 178 | IPR035979 | GO:0003676 | |
Lja5g1427 | 272 | CDD | RRM2_SF2_plant_like | 111 | 186 | - | - | |
Lja5g1427 | 272 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 2 | 259 | - | - | |
Lja5g1427 | 272 | SMART | rrm1_1 | 112 | 181 | IPR000504 | GO:0003723 | |
Lja5g1427 | 272 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
Lja5g1427 | 272 | PANTHER | PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN | 2 | 259 | - | - | |
Lja5g1427 | 272 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
Lja5g1427 | 272 | MobiDBLite | consensus disorder prediction | 189 | 272 | - | - | |
Lja5g1427 | 272 | Gene3D | - | 111 | 188 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja5g1427 | Lja-Chr5 | 14360794 | 14367380 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja5g1427 | 8 | 169 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 25.749 | 5.50e-06 | 45.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja5g1427 | K12890 | - | gmx:100794282 | 322.783 |