Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1427 ATGAGCAGCCGGTCAAGCCGCACAATTTATGTTGGCAACCTTCCTGGCGATATTCGCTTGAGAGAAGTAGAGGATATTTTCTACAAGTTTGGTCCTATTGTTGACATTGATTTGAAGATTCCTCCAAGACCACCAGGTTATGCTTTTGTTCAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATCTACTATCGAGATGGTTATGATTTTGATGGTTTTCGATTACGAGTTGAACTTGCACATGGTGGACGGGGTTCTTCATCATCAGTAGACCGTTACAGTAGTTATAGTGGTGGCAGCAGTAGCCGTGGAGCTTCCAGGCGTTCTGACTATCGTGTTCTGGTGACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAAGATCACATGCGTAAAGCTGGTGATGTGTGTTTCTCTCAAGTTTTCCGTGAGCGTGGAGGCATGACTGGGATAGTAGACTACACCAATTATGATGATATGAAATATGCCTTAAGGAAACTTGATGACTCAGAATTTCGAAATGCCTTCTCTCGAGCATACATACGGGTGAGGGAATATGATCGTGATTATTCTAGAAGCCCCAGTCGTGACTCTAGGAGGAGCTATTCTCGAAGCATCAGCCGCAGTCCATATTTATCACGAAGTCGAAGCCGAAGTCGTAGCTATAGTGGCAGGAGTATAAGTTTGTCTCCAACTGCAAAACGCTCTCGACGTTTGTTATCTCTTTCAAGGTCCCAGTCAAGATCCCGATCTCCAATTTCATCTCCTCGACCTCGTCAGAGTTGCAGTCCAAGCCGAAGTCCAAGGAGTCCATAA 819 0.4542 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRAYIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSPTAKRSRRLLSLSRSQSRSRSPISSPRPRQSCSPSRSPRSP* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1427 272 MobiDBLite consensus disorder prediction 87 105 - -
Lja5g1427 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Lja5g1427 272 Gene3D - 1 110 IPR012677 -
Lja5g1427 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lja5g1427 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Lja5g1427 272 MobiDBLite consensus disorder prediction 82 105 - -
Lja5g1427 272 MobiDBLite consensus disorder prediction 205 272 - -
Lja5g1427 272 MobiDBLite consensus disorder prediction 189 204 - -
Lja5g1427 272 SUPERFAMILY RNA-binding domain, RBD 5 178 IPR035979 GO:0003676
Lja5g1427 272 CDD RRM2_SF2_plant_like 111 186 - -
Lja5g1427 272 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 259 - -
Lja5g1427 272 SMART rrm1_1 112 181 IPR000504 GO:0003723
Lja5g1427 272 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lja5g1427 272 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 2 259 - -
Lja5g1427 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lja5g1427 272 MobiDBLite consensus disorder prediction 189 272 - -
Lja5g1427 272 Gene3D - 111 188 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1427 Lja-Chr5 14360794 14367380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1427 8 169 Eukaryotic Initiation Factors Gene Family AT1G71770 25.749 5.50e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1427 K12890 - gmx:100794282 322.783