Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1425 ATGAGTCGAGGAGGTGTAGCTGGTGCTAAGGGGAAGAAGAAGAGCGTGTCGTTCACCATCGACTGTGCGAAGCCGGTGGAGGACAAGATCATGGACATTGCATCTCTCGAGAAGTTCCTTCAGGAGAGGATTAAGGTTGGTGGCAAGGCTGGTGCTCTCGGCGATGCTGTTACGGTTGCTCGTGAGAAATCTAAGATCACTGTTACTTCTGATAGCAACTTCTCCAAGAGGTACCTCAAGTACTTGACAAAGAAGTACTTGAAGAAACACAATGTGAGGGACTGGCTCAGGGTGATTGCTTCTAACAAAGATAGAAGTGTATATGAACTGAGGTACTTCAACATTGCAGAGAATGAAGGAGAGGAAGAAGATTAG 375 0.4667 MSRGGVAGAKGKKKSVSFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVTVAREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1425 124 Gene3D - 6 124 IPR038526 -
Lja5g1425 124 Pfam Ribosomal L22e protein family 13 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Lja5g1425 124 PANTHER 60S RIBOSOMAL PROTEIN L22-2 1 124 - -
Lja5g1425 124 PANTHER 60S RIBOSOMAL PROTEIN L22 1 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1425 Lja-Chr5 14350155 14352810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1425 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.903 4.70e-68 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1425 K02891 - nnu:104598935 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1425 5 14350155 14352810 Lja5g1425 5 14350155 14352810 ECH
Lja1g0318 1 2775404 2777097 Lja5g1425 5 14350155 14352810 PCT