Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1422 ATGATTGTTGAAGATGAGCGCAAGACGTACCGAGGTAATTTTGTTTATGATCAGGTCAATAATGACATATTGGATGCTGAAGTACAAAGCAGCCACTCCAAAACCCTAGTTGGTGTTCATCATCCTCAACTGCAGGTGCGGCTCTCTCTCTCTCAGCGTCGAAGACAACAAGCAGCAGCCATGGGGATTGATCTGAAGGCAGGAGGTAAGAGCAAGAAGAAGAATAGAACAGCACCCAAGTCCAATGATATCTACCTCAAGCTTCTAGTCAAGCTTTATCGCTTCCTTGTTCGGAGAACTGGAAGCAAGTTTAATGCTGTGATACTCAAGCGCTTGTTCATGAGCAAGGTTAACAAGCCTCCACTCTCATTGTCAAGGCTGGTCAAGTTTATGAAGGGGAAGGATGGTAAGATTGCTGTGGTGGTGGGGACTGTAACTGATGATATTCGTGTTTATGAGGTTCCAACCTTGAAGGTTACCGCTCTTAGGTTTACTGAGACAGCACGGGCAAGAATAGAAAAGGCCGGTGGTGAATGCTTGACATTTGATCAGTTGGCTCTTGCAGCTCCTCTGGGACAGGGCACGGTCCTTCTTAGAGGCCCTAAGAATGCTCGTGAGGCTGTGAGGCACTTTGGTCGTGCTCCTGGTGTGCCACACAGCCACACCAAGCCTTATGTGCGATCAAAGGGAAGGAAGTTTGAGATGGCTAGAGGAAAGAGGAACAGTCGAGGATTCAAAGTTTGA 744 0.4745 MIVEDERKTYRGNFVYDQVNNDILDAEVQSSHSKTLVGVHHPQLQVRLSLSQRRRQQAAAMGIDLKAGGKSKKKNRTAPKSNDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKPPLSLSRLVKFMKGKDGKIAVVVGTVTDDIRVYEVPTLKVTALRFTETARARIEKAGGECLTFDQLALAAPLGQGTVLLRGPKNAREAVRHFGRAPGVPHSHTKPYVRSKGRKFEMARGKRNSRGFKV* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1422 247 PANTHER BNAC02G39900D PROTEIN 57 247 - -
Lja5g1422 247 SUPERFAMILY Ribosomal proteins L15p and L18e 80 199 IPR036227 -
Lja5g1422 247 Gene3D - 61 247 - -
Lja5g1422 247 Pfam Ribosomal protein 60S L18 and 50S L18e 62 247 IPR021131 -
Lja5g1422 247 PANTHER 60S RIBOSOMAL PROTEIN L18 57 247 IPR000039 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1422 Lja-Chr5 14302516 14306863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1422 63 247 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 78.495 2.82e-103 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1422 K02883 - pop:7487794 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0322 1 2834874 2836716 Lja5g1422 5 14302516 14306863 PCT