Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1414 ATGGCTGGAGAATCTGCAGAGAAGGGGAAAAGAGTCGCCATAATTGGGGTGTCAACCTTGTTATTGGTGGCCATGGTTGTGGCTGTCACAGTTGGTGTGAATAACCGTGAAGCGAACAATGATATAGAAGACAACATCAAGAACCACAACCACGTTGCAACCACGGTAAAAGCAGTCCAAACCCTTTGCCATCCCACTGATTACCAGAAGGAATGTGAGGAAAGTCTGATAGCAGAGGCTGGCAACACCACAGACCCAAAAGAGCTTATTAAACTTGCCTTCAACATTACAATTAAGAAAATCAGTGACAAACTTGAGGAAACAAATCTGTTGCATGAGGTTGAGAAGGAGCCTAGAGCTAAGATGGCACTTGACACATGCAAACAACTCATGGATCTTTCTATTGGGGAATTAACAAGGTCATTTGATGGAATAGGCGAGTTTCATCTCACGAATCTTGACAAAATCCTTACGAATGTAAGGGTTTGGCTGAGCGGTGCAGTCACATACCAAGACACATGCTTAGATGGGTTTGAGAACACCACTAGTGAAGCAAGTACCAAGATGAAGGAGCTGTTAACATCAAGCATGCACATGAGTAGCAATGCTCTTGCTATTGTCTCTCAGCTTGCTGATGCTGTATCAGATTGGAATGTCACAAAGCTAGCTGGACGTCGCCTCCTCCATCAGGATTCTGAGACTCCATCATGGGTTAATCTTGATCATCGTAGACTTCTTCATTCGAAGAAGAATGCATTCAAGCACAAGCCTGATGTGACTGTAGCCTTAGATGGAAGTGGAGATTTCAAGAGCATCAATGAAGCATTGGAAAAGGTTCCTGAACATAACAAAAAACCATTTGTGATTTACATCAAGGAAGGTGTTTACCATGAGTATGTTAATGTTACCAAGCATATGACCCATGTTGTGTTTATTGGTGATGGTGGAAAAAAGACAAGAATCACTGGGAACAAGAACTTCATAGATGGGGTTAACACCTACAGAACTGCCACTGTTGCTATTCAAGGAGATCATTTTGCTGCCATCAATATGGGATTTGAGAACTCTGCTGGCCCCCAAAAGCATCAAGCAGTGGCCTTAAGGGTTCAAGCTGACAAGACCATCTTCTTCAATTGCTCAATGGATGGTTATCAAGACACACTTTATGCACACACCATGCGTCAATTCTACCGGGATTGCACTATTTCAGGTACCATCGACTTTGTCTTTGGTAATGCTTTAGCTGTTTTCCAAAACTGCACTTTCGTGGTCCGAAAGCCTTTGGCAAACCAGCAATGCATTGTGACTGCACAAGGTAGGAAAGAGAGACAGGAACCAACAGGAATAGTAATCCAAGGAGGCTCCATTGTGTCTGACCCTGAGTTCTACCCAGTGAGGTTTGACAACAAGGCCTACCTTGCTCGTCCATGGAAGAATTACTCAAGAACTATCATCATGGACGCTTATATTGATGATTTGATTCAACCTGATGGATACCTTCCATGGCAAGGAATAAATGGCCCATCTGGCACTGACACTTGCTTTTATTCTGAGTACCACAACGTTGGTCCAGGTTCAGATAAATCAAAGCGTGCACATTGGGCTGGAATCTGGAATCTCAACTCAAAAGCTGCACATTGGTTCTCTCCATCCAAGTTCTTTCATGGAGAGGACTGGATTGAGAAAACTGGGATTCCTTACTATTCTGGCATTCCAAAACATTACAGGCACAAGAAGACGCTACGTAATTGGTGA 1755 0.4342 MAGESAEKGKRVAIIGVSTLLLVAMVVAVTVGVNNREANNDIEDNIKNHNHVATTVKAVQTLCHPTDYQKECEESLIAEAGNTTDPKELIKLAFNITIKKISDKLEETNLLHEVEKEPRAKMALDTCKQLMDLSIGELTRSFDGIGEFHLTNLDKILTNVRVWLSGAVTYQDTCLDGFENTTSEASTKMKELLTSSMHMSSNALAIVSQLADAVSDWNVTKLAGRRLLHQDSETPSWVNLDHRRLLHSKKNAFKHKPDVTVALDGSGDFKSINEALEKVPEHNKKPFVIYIKEGVYHEYVNVTKHMTHVVFIGDGGKKTRITGNKNFIDGVNTYRTATVAIQGDHFAAINMGFENSAGPQKHQAVALRVQADKTIFFNCSMDGYQDTLYAHTMRQFYRDCTISGTIDFVFGNALAVFQNCTFVVRKPLANQQCIVTAQGRKERQEPTGIVIQGGSIVSDPEFYPVRFDNKAYLARPWKNYSRTIIMDAYIDDLIQPDGYLPWQGINGPSGTDTCFYSEYHNVGPGSDKSKRAHWAGIWNLNSKAAHWFSPSKFFHGEDWIEKTGIPYYSGIPKHYRHKKTLRNW* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1414 584 CDD PMEI-like_3 61 211 - -
Lja5g1414 584 Gene3D - 252 571 IPR012334 -
Lja5g1414 584 TIGRFAM PME_inhib: pectinesterase inhibitor domain 53 210 IPR006501 GO:0004857
Lja5g1414 584 Pfam Pectinesterase 258 556 IPR000070 GO:0030599|GO:0042545
Lja5g1414 584 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Lja5g1414 584 PANTHER PECTINESTERASE 10 572 - -
Lja5g1414 584 SMART PMEI_2 54 206 IPR006501 GO:0004857
Lja5g1414 584 PANTHER PECTINESTERASE 10 572 - -
Lja5g1414 584 SUPERFAMILY Pectin lyase-like 256 570 IPR011050 -
Lja5g1414 584 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857
Lja5g1414 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 210 IPR035513 -
Lja5g1414 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 212 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1414 Lja-Chr5 14242028 14243782 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1414 4 571 Carbohydrate Esterase AT3G05610 50.176 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1414 K01051 - gmx:100820556 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0326 1 2878053 2880952 Lja5g1414 5 14242028 14243782 PCT