Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1413 ATGGCCTCAATTTTGAAGACATCCACTACCTTATACACTCTAATTCTTTCCTTCTTCTTCATCCTCTTCCTTTCTTCCTCTGTTGCAGCTTCCTCCTTCTCATATAGCTCATGCGACCTCACACCCTACCCTGCATTCTGCATAACCACTCTGCCTCCTAACTATTCATCATCCACACATGACCAAACCCATTTCTTCCTTCAACAATCCTTATCAATAACAAAAACAATTCATGACTTAATCTCTTCCTATCTTACAAACCAATTCAACATTCCTGAATCCACATTACACGCCCTTGAAGATTGTCTCAATCTAGCAGAACAGAACACTGATTTCCTGTCCTCTGTTCTCCAAGCCATAAAAAACAGAACTTTGACTAACCATCAGGCTTATAGTGATCTGCAAACCTTGCTCAGTGCCGTTCTAACCAACCACCAAACATGCTTAGATGGTTTCCATGAAGTAACTCCCTATCCAAGAATCACCAGTGCCTTATCAAGCCCTCTTTCTGATGGGGTCAAACTCTATAGCATATCATTAGCCTTTTTCACCCGTTTTTGGGTTAACAATGCCACTGAAAATCCCACAACAGAGAACCCAATTGAAAAAATTATAACTAGAAAGCTGGTGGTGGTGAACCCAGATGGTTCTGGTGATTTCACTACCATAAATGATGCAGTGGATGCTGCACCTAACAATGCCGGCGCAAACAATGGGTACTATGTAATTTATGTTGTTGCTGGGGTTTACAATGAGCACGTGTCTGTGGCTAGGAGCAAGGAGAATCTGATGATGGTTGGAGATGGCATCAACCGCACGGTGATCACCGGCAATCGCAGCGTGGTTGATGGGTGGACCACTTTTCAATCAGCAACTTTTGCTGTGGTCGGAAAAGGCTTCGTCGCAGTGAACATAACATTCCGCAACACCGCCGGTTCCATCAAGCACCAAGCCGTCGCCATGAGAAACGGCGCCGACATGTCCACCTTCTACAGTTGCAGCTTCGAAGGCCACCAAGACACACTCTACGCCCACTCCTTCCGCCAATTCTACAAAACCTGCGACATCTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGCAGTTTTCCAAAACTGCAACCTGAACCCGCGCCTCCCCATGCAGAACCAGTTCAACGCGATCACAGCTCAGGGCCGCATAGACCCGAACCAGAACACCGGCTTCTCCATTCAGAACTGTCAAATTGTGGCGGCGAGCGAGTTAGGTGGTGGTGGTGCGACCAGCAATGTGAAGACGTTTCTGGGTCGGCCTTGGAAGGAGTATTCGAGGACGGTGTTCATGGAGAGTTTCATGGATGGTGTGGTGGATCCGAAGGGGTGGATTGAATGGTCAGGGGATTTTGCATTGAGAACTCTGTATTATGCAGAGTATGCGAATTGGGGACCAGGGGCGAAGACTAGTGAGAGGGTTACTTGGGAAGGGTTTCATCTCATTGGTGAGAAGGATGCTGGTGAGTTTACTGTGGATAGGTTTATACAAGGTGAGGCTTGGTTGAAGATGACAGGAGTGCCTTTCAAAGGTGGCTTATAG 1575 0.4743 MASILKTSTTLYTLILSFFFILFLSSSVAASSFSYSSCDLTPYPAFCITTLPPNYSSSTHDQTHFFLQQSLSITKTIHDLISSYLTNQFNIPESTLHALEDCLNLAEQNTDFLSSVLQAIKNRTLTNHQAYSDLQTLLSAVLTNHQTCLDGFHEVTPYPRITSALSSPLSDGVKLYSISLAFFTRFWVNNATENPTTENPIEKIITRKLVVVNPDGSGDFTTINDAVDAAPNNAGANNGYYVIYVVAGVYNEHVSVARSKENLMMVGDGINRTVITGNRSVVDGWTTFQSATFAVVGKGFVAVNITFRNTAGSIKHQAVAMRNGADMSTFYSCSFEGHQDTLYAHSFRQFYKTCDIYGTVDFIFGNAAAVFQNCNLNPRLPMQNQFNAITAQGRIDPNQNTGFSIQNCQIVAASELGGGGATSNVKTFLGRPWKEYSRTVFMESFMDGVVDPKGWIEWSGDFALRTLYYAEYANWGPGAKTSERVTWEGFHLIGEKDAGEFTVDRFIQGEAWLKMTGVPFKGGL* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1413 524 ProSitePatterns Pectinesterase signature 2. 356 365 IPR033131 -
Lja5g1413 524 SUPERFAMILY Pectin lyase-like 207 522 IPR011050 -
Lja5g1413 524 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 183 IPR006501 GO:0004857
Lja5g1413 524 SMART PMEI_2 29 182 IPR006501 GO:0004857
Lja5g1413 524 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 186 IPR035513 -
Lja5g1413 524 Gene3D - 205 524 IPR012334 -
Lja5g1413 524 CDD PMEI-like_3 38 187 - -
Lja5g1413 524 PANTHER PECTINESTERASE 18 523 - -
Lja5g1413 524 Pfam Pectinesterase 210 510 IPR000070 GO:0030599|GO:0042545
Lja5g1413 524 Pfam Plant invertase/pectin methylesterase inhibitor 35 181 IPR006501 GO:0004857
Lja5g1413 524 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17-RELATED 18 523 - -
Lja5g1413 524 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 186 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1413 Lja-Chr5 14237462 14240733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1413 11 524 Carbohydrate Esterase AT4G02330 49.117 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1413 K01051 - gmx:100810329 728.783