Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1407 ATGGGGCATTTTTCGTCCGTGTTCAACGGGTTGGCGAAGTCATTTGCAATGAAGAAAGGGAGGAGTTCTGGTAGATGTAGCGGGAGAGAAGCTGCAGAAGCAATGGCAAAGGAAGCCAAAAAGAATCACTCCATACTTAAGAGCTCTGGCACCGTTGATGTTGATGGTTCAAACAACTTTGCATCAGTTTTCTCCAAAAAAGGCCAAAAAGGAGTGAATCAAGATTGCTGCTTAGTGTGGGAAGAATTTGGGTGCCAAGAGGACATTATCTTCTGTGGAGTTTTTGATGGGCATGGGCCATGGGGTCACTATGTTGCTAGAAGAGTGAGGAAATCAATGCCAGCATCTTTGCTATGCAACTGGCAAGAGAAACTTTCCCAAACTTCACTTGATCCAGATGTTGATATAGAGTCACAGAAAAAGCAATACAGATTTGATGCATGGAAGCATTCTTACTTGAAGACTTGTGCTGCCATTGATCGAGAACTACAGCAGAATTGCAAGATAGATTCATTTTACAGCGGCACAACAGCCGTATCGATTGTTAGACAGGGTGAAGTAATTGTGATTGCAAATGTTGGTGACTCTCGTGCTGTATTAGCTACAACATCAGATGATGGAAGTTTGGTACCAGTTCAGCTGACAGTAGATTTCAAGCCCAATTTACCTCAGGAGGCAGAGCGAATACTTGAGCACCAAGGAAGGGTGTTCTGCTTAGATGACGAGCCCGGAGTTCACAGGGTGTGGTTGCCGGATGAAGAGTCCCCAGGACTAGCCATGTCCAGGGCTTTTGGTGACTACTGTGTGAAAGAGTATGGTCTAATTTCAGTGCCTGAAGTAACACAAAGGAATATAACCAGCAAAGACCAATTTGTTGTGCTGGCCACTGATGGGGTGTGGGATGTGATCTCCAATGAAGAAGCGGTGGATATTGTATCTTCCACAGCAGACAGAACAGACTCAGCAAAACGTTTGGTGAAGTGTGCAATGCGTGCATGGAAGAGAAAGAGGCGGGGTATTGCCATGGATGACATTTCAGCTATTTGTCTCTTCTTTCACTCTTCAACTTCATTTGACCAAGTTGCTTCAGTAAATTAA 1098 0.4454 MGHFSSVFNGLAKSFAMKKGRSSGRCSGREAAEAMAKEAKKNHSILKSSGTVDVDGSNNFASVFSKKGQKGVNQDCCLVWEEFGCQEDIIFCGVFDGHGPWGHYVARRVRKSMPASLLCNWQEKLSQTSLDPDVDIESQKKQYRFDAWKHSYLKTCAAIDRELQQNCKIDSFYSGTTAVSIVRQGEVIVIANVGDSRAVLATTSDDGSLVPVQLTVDFKPNLPQEAERILEHQGRVFCLDDEPGVHRVWLPDEESPGLAMSRAFGDYCVKEYGLISVPEVTQRNITSKDQFVVLATDGVWDVISNEEAVDIVSSTADRTDSAKRLVKCAMRAWKRKRRGIAMDDISAICLFFHSSTSFDQVASVN* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1407 365 CDD PP2Cc 59 352 IPR001932 -
Lja5g1407 365 ProSiteProfiles PPM-type phosphatase domain profile. 60 352 IPR001932 -
Lja5g1407 365 PANTHER ALPHABET, ISOFORM E-RELATED 1 361 - -
Lja5g1407 365 Pfam Protein phosphatase 2C 83 330 IPR001932 -
Lja5g1407 365 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 361 - -
Lja5g1407 365 SUPERFAMILY PP2C-like 60 353 IPR036457 -
Lja5g1407 365 SMART PP2C_4 51 350 IPR001932 -
Lja5g1407 365 Gene3D - 28 355 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1407 Lja-Chr5 14075030 14078230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1407 1 353 PP2C-type Phosphatase Gene Family AT3G05640 69.663 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1407 - - gmx:100794039 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0559 1 5078411 5082146 Lja5g1407 5 14075030 14078230 PCT
Lja6g0656 6 15059239 15061928 Lja5g1407 5 14075030 14078230 PCT