Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1400 ATGAGTAGGAGTAGTACTGAATTATCAAGAATGAAGGAACCACTTGTTCCGTTGGCCACCCTGATTGGCCGGGAGCTACGGAGTGAAAAAACTGAAAAGCCATTTGTGAAGTATGGGCAGGCTGGCTTGGCAAAGAAAGGAGAAGATTACTTTCTAATCAAGACAGATTGCCAGAGGATTCCTGGGGATTCGTCAACACTGTTTTCTGTCTTTGCGATCTTTGATGGACATAATGGCATGTCCGCTGCTATTTTTACGAAGGAAAACATAATCAATAATGTTATGAGTGCACTACCACAAGATCTCAGCAGGGATGAGTGGCTTCAAGCTTTGCCTCGGGCTCTAGTTGCTGCTTTTGTGAAAACTGACATAGAATTCCAGCAAAAAGGGGAAAATTCTGGAACGACAGCTACATTTGTTCTAATTGATGGATGGACTGTAACTGTTGCATGTGTTGGGGATTCCCGTTGCATATTAGATACCCAGGGAGGTGTTGTTTCTCTATTGACAGTTGATCACAGATTGGAAGAAAATGTAGAAGAGAGGGAACGTGTTACTGCCAGTGGTGGTGAAGTAGGAAGACTAAATGTATTTGGAGGCAGTGAGGTAGGGCCTCTTCGCTGCTGGCCTGGTGGATTGTGCCTTTCAAGATCAATTGGTGACACAGATGTTGGAGAATATATTGTTCCTATACCACATGTTAAGCAAGTGAAGCTGTCAAATGCAGGTGGAAGGCTTATTATAGCTTCGGATGGTATTTGGGATGCTTTATCCTCTGATATGGCCGCCAAGTCATGTCGGGGTGTACCTGCAGAACTTGCTGCAAAACTGGTGGTTAAGGAAGCTCTAAGGACAAGAGGGCTGAAGGATGATACAACCTGCCTTGTTGTAGATATTATTCCTTCAGACCATCCTGTGTTACCACCAACTCCAAGAAAGAAACCTAATATGCTAACTTCCCTTCTTTTTGGAAAGAAATCTCAAAACTCCACGAACAAAGGAACCAATAAGCTTTCTGCAGTTGGTATTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACTGAGAGGCTGGGAAAGGATGCTCCTTCTAATGTGAATTCTGGGATTTCCCGCTGTGCGGTTTGCCAAGCAGATCAAATCCCTAGTGATGGTTTATCAGTGAACAGTGAGCCTATTTTCACTCCGGTATCTAAGCCATTGGAAGGACCATTCCTCTGCACAAACTGTCAGAAGAAGAAAGATGCCATGGAAGGAAAAAGGTCTATCTAG 1275 0.4392 MSRSSTELSRMKEPLVPLATLIGRELRSEKTEKPFVKYGQAGLAKKGEDYFLIKTDCQRIPGDSSTLFSVFAIFDGHNGMSAAIFTKENIINNVMSALPQDLSRDEWLQALPRALVAAFVKTDIEFQQKGENSGTTATFVLIDGWTVTVACVGDSRCILDTQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNVFGGSEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGVPAELAAKLVVKEALRTRGLKDDTTCLVVDIIPSDHPVLPPTPRKKPNMLTSLLFGKKSQNSTNKGTNKLSAVGIVEELFEEGSAMLTERLGKDAPSNVNSGISRCAVCQADQIPSDGLSVNSEPIFTPVSKPLEGPFLCTNCQKKKDAMEGKRSI* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1400 424 PANTHER ALPHABET, ISOFORM E-RELATED 4 423 - -
Lja5g1400 424 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 4 423 - -
Lja5g1400 424 CDD PP2Cc 45 299 IPR001932 -
Lja5g1400 424 SUPERFAMILY PP2C-like 39 299 IPR036457 -
Lja5g1400 424 SMART PP2C_SIG_2 52 299 IPR001932 -
Lja5g1400 424 Gene3D - 35 303 IPR036457 -
Lja5g1400 424 SMART PP2C_4 25 297 IPR001932 -
Lja5g1400 424 ProSiteProfiles PPM-type phosphatase domain profile. 27 299 IPR001932 -
Lja5g1400 424 Pfam Protein phosphatase 2C 65 282 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1400 Lja-Chr5 14017988 14021641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1400 4 422 PP2C-type Phosphatase Gene Family AT1G09160 77.327 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1400 - - gmx:100794630 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1400 5 14017988 14021641 Lja5g1400 5 14017988 14021641 ECH