Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1398 ATGAACCAAATCCTCAAATTAACACGCGACAATAAGAGGCTATTTGTGTCAGGTGAGGAGGTGCTTCGCAATAGAGGCCAACAAGGAGTTTTGGAGCTGCGAGGTTACAAAAGAGAGAAAGAAACCAAATTCATTCATCGTTTGCGGTTGGTTGCTTTGTTCCTCCTCTCTCAGCAGCAACAGCAGCAGATGGTAAGGGGAGGGAAGGTTACTGGCAAACGCAGTTCTAGAAAAAAGGTTCGGTCCGACAAGGGTAGTTCTGATGATTCGGACGAGGAATATGTGGTTTCCGATGGAAATAGGAATTCATCTGATGAGGATTATTGCTCCTCGTTAGATGGATGTGCATCAGAGGATAGTTTTGATGGTTTTATAGTGGATGAGGAGGAGGAGGAGTTTCGAAGAGTCAGGAATTCCAGTAGATCCAAGGCGAAAATTGGGATATGCAGCTGGCGGAAAAATGCAAGTAGAAGCTCGCGAAAGAGGGGAAGGATTGCATATGCAGATCAAGAGGAGGAGGAGGAAGAAGAAGAAGAAAAGGAATTTCGAAGTGTGAGGAATGCTAATAAATCAAAAAGTGCCATTTGCGGTTGGCGGAGAAATGCGAGCAAAAACTCGAGAAAGAGGCGAAGGATTGTACATGCAGAACAAGAAGGCGAGGAAGAAGAGAGTTTGGAGGACAAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGAAGAGGAATTTCAAGGAGCTAGGGCTATCAATAGATCGAAGGTCCAAAATGGTGTTTGTGATAAGCAAAAAAACGCACATGCAGAACAATTAGAAGAAGAAGATGAGGGGGAGGAGGACGAGGAGGAGAAGAAAGCGGAGGAACAGGAAGAGGAGGTGGAGGAGAGACATCTAGATGAGGAAGAAAAAGAAGAGGAAAAAGAGGAGGGAGATAGAGATGAAGAGGATGAGGATTTTGAATATGATGATGAGGATGTGGACGAGGATGAGGATGAGGATGATGAGTTTTCACCAGAGGAAGAAGATTTTACAGACGAGGAAGAAGAAATGAAAATGGGCAAGAAGGTTCTGCCAAAAAGGGCCTCTCTAAGGAATAATATGGGGTTAAGGAGGAAAGTAAAATGTGCCAGTGAAGATGATTTTATAGATAATGACCCCACCATCACGACAACATGCAGAAAGAAGCGGAGCCGCCGAAAGAGGAGAAGACTGCTTCTTTCAGATTCAGATTGTGCGCCTTCGGAAGCTTCTGATTTTGAGTTTACCATCTCTGAAGAAGAAAGAGAACGGGTGAGAGAAGCCAAGAAGTTGTGTGGAAGGGTGAGAAATAACTTGAGGAGTTCATCACTTCTAATAAACAATGAAGAGGCAGTAGTCCATGAAGATCAACCTCAACAAAAGAAGCCTCCAGGTTTGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGTGAGAAAGGGTAAAGAAAAGATGGAGGATTTGAAAAGTGAGGTGGTAAAGCAGGTTTGTGGGATTTGTCTGTCCGAGGAAGATAGAAGAAGGGTAAGGGGAGTTCTTAATTGTTGCACTCACTACTTTTGCTTTGCTTGCATTATGGAGTGGGGAAAAGTGGAATCTCGCTGCCCTGTGTGTAAACAGCGATTCAAAACAATCAGTAAGCCTGCACGATCATCAAAAGGGGTTGAATTAAGAGAAATGGTTATACAAGTCCCTGAACGTGATCAGGTTTATCAGCCCTCTGAGGAAGAACTTAGGAGCTATATTGATCCATACGATTCTGTTATTTGTTCAGAGTGTCTTCAAGGTGGAGACGATGGCCTCATGTTACTATGTGATGTCTGTGATTCCCCTGCGCATACATATTGTGTTGGCTTAGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGTTGTAGACCAGTTGCTCTAGGAACTTCAAGCTCCCAAGCTCAAGAGGCTGATCCTATTGCGACAATCCAGAGCCTGCATGTTAGACCATCCCCTGTACATGTACGAGAGAGTATAGATCTCAACTTGATTTCTTCACCCCGTGCGCCTCCTTCATCCTCAAGATTTGCTGGCAGAAGTGTCGAAGGCGTTTCTCCAGTATCTGGAGGGGCACCGACTTTATCAGAGAGACGGTGGATACACCGACAAATTCAACAGATTATTTCAATGGATAGGATGACTTCTACAACTGGAAGAACCAATGGTATATCAGCTATCAGTTCAACTAGTGACTTATATAGCTCTCAAATTGATCAAAGTAGGGAAACATCCTCTCAATTTGCAAGGACTGAGGATGTGGGGACATCATATCACACATTTTTTGCAGAGAGATTACGTAACAATATTTCTCCATTAATGCAGAATGAGGCATTATGGCCCAGACTTTTGGGGACACCCCCAGTACCCAATTATGAACAAGCTCTTCAGTTCAACAGATCAAACATTGTCCCTGATGGTAGCTCATTCCCTGCTGTCAAAGAAGAGAGTAACTTTCACCTTGTACACGAGCAGTTGGAATCAATGGTTACAAGCCACCTGAAGAGCTTGTCTCAAAATATTGATTTAGGCCAAAGTACTTTCATGGACATTGCAAAGAGTTGTATGCACACCATACTAGCAGCATGTGGTCTTGAGCACATGAAGAGTGAGGTTTGCACTGTGCCTCCGCCATCTGTGTGTCCGCACATTGAAATGATGGCTGGTGGACAATCAAGTCTGATTAAAGGTTGTTGTTCATCTTGCTTTGATTCTTTTGTAGGAGAAGTGGTGAAGAGGATTTTGGATACAAGAGTTTCGTCACAGTGGTTAAGACTAGGTCTCTAG 2826 0.4398 MNQILKLTRDNKRLFVSGEEVLRNRGQQGVLELRGYKREKETKFIHRLRLVALFLLSQQQQQQMVRGGKVTGKRSSRKKVRSDKGSSDDSDEEYVVSDGNRNSSDEDYCSSLDGCASEDSFDGFIVDEEEEEFRRVRNSSRSKAKIGICSWRKNASRSSRKRGRIAYADQEEEEEEEEEKEFRSVRNANKSKSAICGWRRNASKNSRKRRRIVHAEQEGEEEESLEDKEEEEEEEEEEEEEFQGARAINRSKVQNGVCDKQKNAHAEQLEEEDEGEEDEEEKKAEEQEEEVEERHLDEEEKEEEKEEGDRDEEDEDFEYDDEDVDEDEDEDDEFSPEEEDFTDEEEEMKMGKKVLPKRASLRNNMGLRRKVKCASEDDFIDNDPTITTTCRKKRSRRKRRRLLLSDSDCAPSEASDFEFTISEEERERVREAKKLCGRVRNNLRSSSLLINNEEAVVHEDQPQQKKPPGLKGKEKIEEPQVRKGKEKMEDLKSEVVKQVCGICLSEEDRRRVRGVLNCCTHYFCFACIMEWGKVESRCPVCKQRFKTISKPARSSKGVELREMVIQVPERDQVYQPSEEELRSYIDPYDSVICSECLQGGDDGLMLLCDVCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGTSSSQAQEADPIATIQSLHVRPSPVHVRESIDLNLISSPRAPPSSSRFAGRSVEGVSPVSGGAPTLSERRWIHRQIQQIISMDRMTSTTGRTNGISAISSTSDLYSSQIDQSRETSSQFARTEDVGTSYHTFFAERLRNNISPLMQNEALWPRLLGTPPVPNYEQALQFNRSNIVPDGSSFPAVKEESNFHLVHEQLESMVTSHLKSLSQNIDLGQSTFMDIAKSCMHTILAACGLEHMKSEVCTVPPPSVCPHIEMMAGGQSSLIKGCCSSCFDSFVGEVVKRILDTRVSSQWLRLGL* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1398 941 SUPERFAMILY RING/U-box 499 548 - -
Lja5g1398 941 Coils Coil 212 248 - -
Lja5g1398 941 MobiDBLite consensus disorder prediction 454 485 - -
Lja5g1398 941 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 494 560 IPR013083 -
Lja5g1398 941 PANTHER F18C1.6 PROTEIN 205 930 - -
Lja5g1398 941 MobiDBLite consensus disorder prediction 64 107 - -
Lja5g1398 941 Pfam Ring finger domain 499 542 IPR001841 -
Lja5g1398 941 Coils Coil 266 316 - -
Lja5g1398 941 MobiDBLite consensus disorder prediction 81 100 - -
Lja5g1398 941 ProSitePatterns Zinc finger RING-type signature. 519 528 IPR017907 -
Lja5g1398 941 PANTHER F18C1.6 PROTEIN 205 930 - -
Lja5g1398 941 SUPERFAMILY FYVE/PHD zinc finger 567 638 IPR011011 -
Lja5g1398 941 SMART PHD_3 592 637 IPR001965 -
Lja5g1398 941 MobiDBLite consensus disorder prediction 270 345 - -
Lja5g1398 941 MobiDBLite consensus disorder prediction 458 485 - -
Lja5g1398 941 Coils Coil 168 188 - -
Lja5g1398 941 MobiDBLite consensus disorder prediction 160 357 - -
Lja5g1398 941 Pfam PHD-finger 592 638 IPR019787 -
Lja5g1398 941 CDD RING-HC_Topors 500 542 - -
Lja5g1398 941 ProSiteProfiles Zinc finger RING-type profile. 500 542 IPR001841 -
Lja5g1398 941 MobiDBLite consensus disorder prediction 219 242 - -
Lja5g1398 941 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 644 IPR013083 -
Lja5g1398 941 SMART ring_2 500 541 IPR001841 -
Lja5g1398 941 ProSiteProfiles Zinc finger PHD-type profile. 590 639 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1398 Lja-Chr5 14002390 14006969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1398 587 636 C2H2 Transcription Factor Family AT3G01460 48.077 8.80e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja5g1398 PHD 3.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1398 - - lja:Lj0g3v0060169.1 1138.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1398 5 14002390 14006969 Lja5g1398 5 14002390 14006969 ECH