Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1396 ATGGCGACTCGGAATCGCACTTTGCTTTTCCGAAAGCACCGAGACGCATTGAAGAGCGTCCGATTCCCCTCCTCCTCTTCGCCGCCCTCCGCCGCCGCCGGCCCCGTCATCGAATTGGTCAGCACCTCGCTTCTCAATCCCAATCGCTCTTACACTCCGCTTAGCACAGAGGATCCCGCTAATTCAAGTAAGGGTGCTATTCCAATTACTGTGGGGTTACCGCCGGCGTGGGTGGATGTATCTGAAGAGATATCAGCAAATGTGCAACGGGCGCGATCGAAAATGGCGGAGTTGGCTAAGGCTCACGCGAAGGCGTTAATGCCGTCGTTTGGAGATGGTAAGGAGGATCAGCATGCGATTGAATCGCTAACTTATGAGATAACTGACTTGATTAAGAGATCGGAGAAGAAGCTGCGGAGACTTTCTGCTGCTGGGCCTTCGGAGGATTCCAATGTCAGGAAAAATGTGCAGCGTTCGCTTGCTACTGACCTCCAGAACCTCTCTGTAGAGCTTCGCAAGAAACAATCAACTTATTTGAAGCGCCTCAGGCAGCAAAAAGAGGGTCAAGATGGGGTTGATCTAGAGATCAACTTAAATGGAGGAAAATCTAGATATGAAGATGATGACTTGGATAATATGGTATTTAGTGAGCATCAGATGGCCAAACTGAAAAAAAGTGAAGCATTCACAGTAGAAAGAGAAAAAGAGATCCAACAAGTTGTGGAATCTGTGAACGAGCTTGCTCAAATTATGAAAGATTTATCAGTACTAGTCATAGACCAGGGAACCATTGTTGATAGAATAGACTACAACATTCAGAATGTCGCAACCACAGTTGAGGATGGCCTTAAACAGCTTCAGAAGGCAGAGAGAACTCAGAAAAAGGGGGGCATGGTAATGTGTGCTACGGTGCTTCTTATCATGTGCTTTGTTATGTTGGTTCTCTTGGTCATTAAGGAAATTATTTTGTGA 972 0.466 MATRNRTLLFRKHRDALKSVRFPSSSSPPSAAAGPVIELVSTSLLNPNRSYTPLSTEDPANSSKGAIPITVGLPPAWVDVSEEISANVQRARSKMAELAKAHAKALMPSFGDGKEDQHAIESLTYEITDLIKRSEKKLRRLSAAGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRQQKEGQDGVDLEINLNGGKSRYEDDDLDNMVFSEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLLIMCFVMLVLLVIKEIIL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1396 323 CDD SNARE_syntaxin16 232 288 - -
Lja5g1396 323 SMART SynN_4 68 183 IPR006011 GO:0016020
Lja5g1396 323 Coils Coil 81 101 - -
Lja5g1396 323 PANTHER SYNTAXIN 1 318 IPR045242 -
Lja5g1396 323 Pfam SNARE domain 263 315 IPR000727 -
Lja5g1396 323 Gene3D - 74 281 - -
Lja5g1396 323 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 227 289 IPR000727 -
Lja5g1396 323 ProSitePatterns Syntaxin / epimorphin family signature. 233 272 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lja5g1396 323 SUPERFAMILY t-snare proteins 73 282 IPR010989 GO:0016020|GO:0016192
Lja5g1396 323 SMART tSNARE_6 222 289 IPR000727 -
Lja5g1396 323 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1396 Lja-Chr5 13990344 13995243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1396 1 323 SNARE and Associated Proteins AT5G26980 77.676 0.0 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1396 K08489 - gmx:100796741 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1396 5 13990344 13995243 Lja5g1396 5 13990344 13995243 ECH