Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1395 ATGTCGTACCGCCCTACCGGCAACTCCAGGACCGAGGTCCGTCGCAGTCGGTACAAGGTTGCGGTGGACGCTGAAGAAGGTCGCAGACGCCGTGAGGACACCATGGTCGAGATCCGCAAGAATCGCAGGGAGGAGAGCTTGTTGAAGAAGAGACGCGAGGGTCTCCAGCCTCAGCAGCAAGTTCCTTCCGCCGCTCACTCCACTGTCGTCGAGAAGAAGTTGGAACACCTCCCAGCCATGGTTGCGGGTGTTTGGAGTGATGACAATAGCATGCAGCTTGAATCCACGACGCAGTTTCGCAAGCTGCTTTCGATTGAACGTACTCCGCCGATTGAGGAGGTTATACAGTCTGGTGTAGTTTCCCGCTTTGTCGAGTTTCTGATGAGGGAAGACTTTCCGCAATTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCGGGAACATCGGAAAACACCAAGGTGGTGATTGATCATGGGGCTGTCCCGATTTTTGTGCAGCTTCTCGCTTCTCCTAGTGATGACGTCCGTGAACAGGCAGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCTAGATGCCGTGATCTTGTTCTTGGTAATGGGGCTTTGATTCCTCTGTTGGCACAATTGAATGAACACGCCAAACTTTCTATGCTAAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCATTTGATCAGGTTAAACCTGCACTTCCTGCTCTCACTAGTCTAATCCATTCAAACGATGAAGAGGTATTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTCATTGAAGCTGGTGTGTGCCCCCGGCTTGTTGAGCTGCTACTGCACCCATCTCCTTCAGTGCTCATTCCTGCTCTTCGCACTGTTGGAAATATTGTCACTGGAGATGATATGCAAACTCAGGTTATAATTAACCATCAGGCTCTTCCTTGCCTTTTGAATCTGTTGGCCAGTAATTATAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGGAATAAACAACAAATTCAGTCTGTGGTTGAGGCCAATATAATTGGTCCTTTGGTGAACCTGCTTCAAAATGCTGAGTTCGATATCAAAAAAGAGGCTGCGTGGGCTATCTCAAATGCTACATCTGGTGGCGCTCATGAACAAATCAAGTACCTAGTGAGTCAAGGGTGTATCAAGCCCTTGTGTGATCTTCTTATCTGTCCTGATCCTAGGATCGTCACAGTTTGTCTGGAAGGCCTTGAAAACATCCTGAAGGTAGGAGAAGCTGATAAAAATACAGGCAATTCTGGGGACGTGAATCTATATGCCCAAATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTTCAGAGTCATGACAACACAGAGATTTATGAAAAGGCAGTGAAGATTCTTGAAACGTACTGGTTGGAGGAAGAAGATGAGACTATGCCTCCAGGGGATGCTGCTGCTCAATCAGGGTTCAACTTTGGGGGCACTGAGGTTCCTTCTGTGCCTTCCGGTGGATTCAACTTCAATTAG 1605 0.4741 MSYRPTGNSRTEVRRSRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQPQQQVPSAAHSTVVEKKLEHLPAMVAGVWSDDNSMQLESTTQFRKLLSIERTPPIEEVIQSGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGNGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALTSLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLASNYKKSIKKEACWTISNITAGNKQQIQSVVEANIIGPLVNLLQNAEFDIKKEAAWAISNATSGGAHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNTGNSGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDAAAQSGFNFGGTEVPSVPSGGFNFN* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1395 534 Pfam Importin beta binding domain 14 97 IPR002652 GO:0006606|GO:0061608
Lja5g1395 534 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 245 287 IPR000225 GO:0005515
Lja5g1395 534 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 118 161 IPR000225 GO:0005515
Lja5g1395 534 PANTHER IMPORTIN SUBUNIT ALPHA 4 523 - -
Lja5g1395 534 Pfam Armadillo/beta-catenin-like repeat 277 315 IPR000225 GO:0005515
Lja5g1395 534 Pfam Armadillo/beta-catenin-like repeat 361 400 IPR000225 GO:0005515
Lja5g1395 534 Pfam Armadillo/beta-catenin-like repeat 319 359 IPR000225 GO:0005515
Lja5g1395 534 Pfam Armadillo/beta-catenin-like repeat 406 442 IPR000225 GO:0005515
Lja5g1395 534 Pfam Armadillo/beta-catenin-like repeat 150 189 IPR000225 GO:0005515
Lja5g1395 534 Pfam Armadillo/beta-catenin-like repeat 192 233 IPR000225 GO:0005515
Lja5g1395 534 Pfam Armadillo/beta-catenin-like repeat 246 273 IPR000225 GO:0005515
Lja5g1395 534 Pfam Armadillo/beta-catenin-like repeat 109 148 IPR000225 GO:0005515
Lja5g1395 534 SMART arm_5 276 316 IPR000225 GO:0005515
Lja5g1395 534 SMART arm_5 361 401 IPR000225 GO:0005515
Lja5g1395 534 SMART arm_5 107 148 IPR000225 GO:0005515
Lja5g1395 534 SMART arm_5 235 274 IPR000225 GO:0005515
Lja5g1395 534 SMART arm_5 318 359 IPR000225 GO:0005515
Lja5g1395 534 SMART arm_5 191 233 IPR000225 GO:0005515
Lja5g1395 534 SMART arm_5 150 190 IPR000225 GO:0005515
Lja5g1395 534 SMART arm_5 404 444 IPR000225 GO:0005515
Lja5g1395 534 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 203 IPR000225 GO:0005515
Lja5g1395 534 Gene3D - 75 498 IPR011989 -
Lja5g1395 534 Pfam Atypical Arm repeat 459 505 IPR032413 -
Lja5g1395 534 PIRSF Importin_alpha 6 533 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lja5g1395 534 SUPERFAMILY ARM repeat 15 502 IPR016024 -
Lja5g1395 534 Gene3D - 12 52 IPR036975 GO:0006606
Lja5g1395 534 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Lja5g1395 534 PANTHER IMPORTIN ALPHA 4 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1395 Lja-Chr5 13982647 13987329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1395 240 466 U-box Gene Family AT2G23140 23.246 4.00e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1395 K15042 - gmx:100789135 983.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1333 4 11932694 11937994 Lja5g1395 5 13982647 13987329 ECH
Lja6g2287 6 51838134 51841998 Lja5g1395 5 13982647 13987329 ECH
Lja5g1395 5 13982647 13987329 Lja5g1395 5 13982647 13987329 ECH