Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1385 ATGGTCTCGAGGGTCAGGGTCTCTGCTGTTGATCACACTGATAATGGTGTTCAGGGTCCTGATGTTACCATTAGCTGTGCTGAAATTCAGCATGCCATTTCTGTTGTGATGGGCTTTCTTCTTGCTGAAATGGCCTGTTGCTGTTGGTGCTTAACGTCTCCATCAATTTATTCAAACTGTATTGTGGAGATGAGCATGACTGGGAGGGGCTTTATGAGTCTATTATTGGCTACAGTTGGAGGGTCGTCAATGGCACTCTTTAGAAGAGTTGGAGGAGGTATATACACCAAAGCTGCTGATGTTGGTGCTGACCTTGTGGGGATATCCTTGAAGGTGATCCACGCAACCCAGCTAATCATCATAACCATACTTGCCATTGTCAACTTCTTTGCTCTGCCATCAGAATTTGCTCTCTATAACTTTGGAACCACTAAGGTTGTGAAGAACTGTCCAGTGCAAGAAGTGGCAGATTCCTGCAGGACTGGAGCTGCAACAAATGTGATTTTTGGATTGGCACTGGGATACAAATCAGTCATTATTCCCATATTTGCTATTGCTGTTGCTATTTATGTAAGCTTCAGTCTTGCCGCTATGTATGGAATTGCTGTTGCAGTCCTTGGAATGCTCAATGCATTGGATGCTGCAGGAAACACCACAGCCGCTATTGGCCTGGGTTTTTCCATTGGATCAGCTGCACTCGTGTTTCTTGCATTGTTTGGTGCTTATGTGAGCAGAGCAGGCATCAAAACAGTGAATGTGCTGACCCCAAAAGTTTTATTGGTTTGA 786 0.4478 MVSRVRVSAVDHTDNGVQGPDVTISCAEIQHAISVVMGFLLAEMACCCWCLTSPSIYSNCIVEMSMTGRGFMSLLLATVGGSSMALFRRVGGGIYTKAADVGADLVGISLKVIHATQLIIITILAIVNFFALPSEFALYNFGTTKVVKNCPVQEVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVAIYVSFSLAAMYGIAVAVLGMLNALDAAGNTTAAIGLGFSIGSAALVFLALFGAYVSRAGIKTVNVLTPKVLLV* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1385 261 PANTHER PYROPHOSPHATE-ENERGIZED VACUOLAR MEMBRANE PROTON PUMP-LIKE 112 149 - -
Lja5g1385 261 PANTHER PYROPHOSPHATE-ENERGIZED VACUOLAR MEMBRANE PROTON PUMP-LIKE 73 108 - -
Lja5g1385 261 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 112 149 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lja5g1385 261 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 73 108 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lja5g1385 261 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 150 210 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lja5g1385 261 Pfam Inorganic H+ pyrophosphatase 148 210 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lja5g1385 261 Pfam Inorganic H+ pyrophosphatase 36 107 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lja5g1385 261 Pfam Inorganic H+ pyrophosphatase 210 260 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lja5g1385 261 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 210 260 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lja5g1385 261 PANTHER PYROPHOSPHATE-ENERGIZED VACUOLAR MEMBRANE PROTON PUMP-LIKE 210 260 - -
Lja5g1385 261 PANTHER PYROPHOSPHATE-ENERGIZED VACUOLAR MEMBRANE PROTON PUMP-LIKE 150 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1385 Lja-Chr5 13899180 13902822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1385 116 260 Primary Pumps ATPases AT1G15690 53.023 2.71e-55 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1385 K23025 - egr:104428252 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1385 5 13899180 13902822 Lja5g1385 5 13899180 13902822 ECH