Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1382 ATGGGGAATCAGAAGCAGAAGTGGACGGCTGAGGAAGAAGACGCTCTCCACCGTGGCGTCCAGAAGTACGGCGCAGGCAAGTGGAAGAACATCCTCAAAGATCCCGAATTCGCTCCTTCCCTCACGAGCCGTTCCAACATCGATCTCAAGGATAAATGGAGGAATTTAAATGTTGGCACTGGTCAAGGCTCCAATGTTAAGTCTAGAACTCTCAAGCCCAAACTACCAGCACCTTGTGCAGTTACAACTCCTGATCCTACTGTGCAAGATGTTGCTCCTGTGCAAAATGCTACTCCTAAGATTCCATCTCAAAATTCTTCTGAAAAGGATCATGATGTCAAAGTTCCTCCTCGGTACAATGGAATGATATTTGAAGCTTTATCGACGATCCAGGATGCTAATGGTTCTGATATGAATGCCATTGCTAGTTTCATCGAGCAAAAACACACACTTCATCAAAATTTCAGAAAGGCATTAGGTGCAAGGTTAAGGAAGCTTGTTAGTCAGGGGAAGCTTGAAAAGGTACACAATTGCTACAAGATTAAAAAGGACACCCCATCAGGAACGAGATTACCCTCTCCAAAATCACCTGTGCCAAAACAAAATGAGATTTGGCCACAACAATCCCCGACCTCTAGTTTTGTAACAAGGGATGAGATAATAAAGGATGCCGCTGATACTGCAGCCTACAGAGTTGCTGACGCCGAGAACAAATCATTTTTGGCCGCCGAGGCAATCAGGGAGGTGGTGAGAATCTCAAGGCTGGCTGAAGATACTGATTCAATAATACAGCTTGTGCAAGATATTTATGAACGATGTTCACGTGGTGAAATTGTTCTTTTGGCTTGA 849 0.4452 MGNQKQKWTAEEEDALHRGVQKYGAGKWKNILKDPEFAPSLTSRSNIDLKDKWRNLNVGTGQGSNVKSRTLKPKLPAPCAVTTPDPTVQDVAPVQNATPKIPSQNSSEKDHDVKVPPRYNGMIFEALSTIQDANGSDMNAIASFIEQKHTLHQNFRKALGARLRKLVSQGKLEKVHNCYKIKKDTPSGTRLPSPKSPVPKQNEIWPQQSPTSSFVTRDEIIKDAADTAAYRVADAENKSFLAAEAIREVVRISRLAEDTDSIIQLVQDIYERCSRGEIVLLA* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1382 282 Gene3D - 114 202 IPR036388 -
Lja5g1382 282 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lja5g1382 282 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 281 - -
Lja5g1382 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Lja5g1382 282 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lja5g1382 282 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Lja5g1382 282 CDD SANT_TRF 6 57 - -
Lja5g1382 282 SMART sant 4 59 IPR001005 -
Lja5g1382 282 MobiDBLite consensus disorder prediction 189 209 - -
Lja5g1382 282 MobiDBLite consensus disorder prediction 183 209 - -
Lja5g1382 282 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 115 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja5g1382 282 SUPERFAMILY "Winged helix" DNA-binding domain 117 192 IPR036390 -
Lja5g1382 282 PANTHER SINGLE MYB HISTONE 4 1 281 IPR044597 GO:0003691
Lja5g1382 282 Pfam linker histone H1 and H5 family 117 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja5g1382 282 Gene3D - 2 58 - -
Lja5g1382 282 SMART h15plus2 113 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lja5g1382 282 MobiDBLite consensus disorder prediction 55 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1382 Lja-Chr5 13881049 13884895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1382 1 282 Single Myb Histone (SMH) Gene Family AT1G72740 45.172 7.96e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja5g1382 Linker_histone 1.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1382 K09422 - gmx:778177 325.094