Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1375 ATGGAAGATATTTACAGGATGAACCCTTTTCTATCTAGTCCACAAGATCATGTTGTTGCCACTGCTGGTTCTTCTCAACTGCATCTAGGCCTTGTGGCTAGTAACTACCTTCAGATGGAAGAGCCTGAACCGGGTTTGACCGGGTCAGAAATGTCGGATCGGTTGATCAAGAGCCAGATCGCCTCTCACCCTCTTTATCCAAATCTTGTTTCTGCTTACATCGAATGCCAAAAGGTTGGAGCACCGACAGAACTAGCTTCCTTTCTTGAAGAAATAGCCCGTGAGAACCACAATAGTTCTAATGGTTTCGGCCGTGAGATAGGAGATGATCCAGAACTTGATGAATTCATGGAATCATACTGCGAAGTTCTTCAGAGATACCAACAGGAGTTGTTCAAACCCTTCAATGAAGCAACCTTGTTTTTGTGTGATATTGAATCACAGTTAAGTGAGCTTTGTAAAGGAACACTAACAATGCCATCAGATAACAACCGGTCAGATGAGGCTGCTGGGACATCAGAGGATGAATTGAGTTGTGGGAAGGTGGAAGCGGTGGAATATTCCGGCATGCGTCAGGGGGATCAAGAGCTAAAAGAAATGCTCCTTCGTAAGTATGGCGGTTATCTTAGCAGCTTGAGAAAGGAATTTCTAAAGAAAAGGAAAAAGGGTAAGCTACCAAAGGATGCAAGGAAAACGCTTACGGATTGGTGGAACACCCACTATAGGTGGCCTTATCCTACGGAGGAAGAGAAATTGCAGCTATCAGAAATGACTGGACTTGATATAAAGCAGATCAACAATTGGTTCATCAATCAGAGGAAACGGCATTGGAAACCATCTGAAGATATGAGATTTGCAATAATGGAGGGTCTATGTTATCCAAGGTGTACCTTTTTTTTGTCTCTGTCATCCAACGTGTACTAA 924 0.4329 MEDIYRMNPFLSSPQDHVVATAGSSQLHLGLVASNYLQMEEPEPGLTGSEMSDRLIKSQIASHPLYPNLVSAYIECQKVGAPTELASFLEEIARENHNSSNGFGREIGDDPELDEFMESYCEVLQRYQQELFKPFNEATLFLCDIESQLSELCKGTLTMPSDNNRSDEAAGTSEDELSCGKVEAVEYSGMRQGDQELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKDARKTLTDWWNTHYRWPYPTEEEKLQLSEMTGLDIKQINNWFINQRKRHWKPSEDMRFAIMEGLCYPRCTFFLSLSSNVY* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1375 307 SMART HOX_1 218 283 IPR001356 GO:0003677
Lja5g1375 307 Pfam KNOX2 domain 107 153 IPR005541 GO:0003677|GO:0005634
Lja5g1375 307 Pfam Homeobox KN domain 236 275 IPR008422 GO:0003677|GO:0006355
Lja5g1375 307 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 290 - -
Lja5g1375 307 MobiDBLite consensus disorder prediction 157 177 - -
Lja5g1375 307 CDD homeodomain 228 280 IPR001356 GO:0003677
Lja5g1375 307 Gene3D - 214 286 - -
Lja5g1375 307 SMART KNOX2_2 103 154 IPR005541 GO:0003677|GO:0005634
Lja5g1375 307 Pfam KNOX1 domain 56 97 IPR005540 GO:0003677|GO:0005634
Lja5g1375 307 ProSiteProfiles ELK domain profile. 196 216 IPR005539 GO:0003677
Lja5g1375 307 SUPERFAMILY Homeodomain-like 218 288 IPR009057 -
Lja5g1375 307 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 290 - -
Lja5g1375 307 SMART KNOX1_2 54 98 IPR005540 GO:0003677|GO:0005634
Lja5g1375 307 Pfam ELK domain 196 217 IPR005539 GO:0003677
Lja5g1375 307 ProSitePatterns 'Homeobox' domain signature. 254 277 IPR017970 GO:0000981|GO:0006355
Lja5g1375 307 ProSiteProfiles 'Homeobox' domain profile. 216 279 IPR001356 GO:0003677
Lja5g1375 307 SMART ELK_2 196 217 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1375 Lja-Chr5 13815951 13822259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1375 23 289 Homeobox Transcription Factor Family AT1G70510 50.181 2.58e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lja5g1375 KNOX2 5.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1375 - - gmx:102660463 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1375 5 13815951 13822259 Lja5g1375 5 13815951 13822259 ECH