Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1373 ATGTTGGGCTCATCTTCAAAAGGAGATGCTATTTCGTCTGATCACACGAGGATTTCTTCAGGGCAGTATGGTTTCCCGAGAAATAATGATGCCCTCACTCGTCTCCAGAGTACTTTTGTTCCGGAAGATGTTCCTGATGCGGCTTCTGAGAAAGATCTGGGTAATGAGTTTTTCAAACAGAAGAAGTTTAAGGAAGCTATTGACTGCTACTCAAGGAGCATTGCTTTATCTCCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCTTGATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTCGATGACCGTTACATAAAAGCATACTCGCGCCGAGCAACGGCTAGAAAAGAAGTTGGGAAGTTTAAAGGATCCATGGAGGATGCTGACTTTGCCTTGAGGTTGGAACCTAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGTCTTTGTATGATAATGAAAATCTTCGGAAAGTATCTGGAGCACTAAGAAGTACTGTACAGGGAACTCAAAAAGTGGGAAAGTCAGAGACAAAAGTTAATGGAGGCAGCATCCCCTCCATTTCACATGTTACTCAAAAGTCAGGGCCAGCTGAAGTTCATCAAACAAAGGGCAATGAGAGGCAAGTCCCTGCTAAAGAATCACTCTTAATGGAGATTGATAACAGGGACACAAGAGCCAGAAACAGCACTCAAGGACAAGGGAATGGTTCTAAGGAAGGTTCTACTTCAAGTAACAGTTTGGAGCAGAGAAATCACAGAGCTAGAAAGCCCGAAATAAAAGCGTCTGTTCAAGAGCTTGCTTCTCGTGCGGCTTCTCGAGCCTTGGCCGAAGCTGCCAAAAACATAACACCACCAACTACAGCTTATCAGTTTGAGGTCTCTTGGAAAGGGTTTTCAGGTGATCTTGTTTTGCAGACTCGACTGTTGAAGGCCACGTCCCCCCCTGAATTACCAAAAATATTAAAAAATGCCTTATCATCTACCCTGCTCATTGAGATCATCAAGTGTGTTGCTTCCTTTTTCACTGAAGACATGGATTTGGCTGTCAGTTTTATGGAGAATTTGACCAAAGTTCCGAGATTTGACATGATTGCAATGTGCCTTCCATCAGCAGATAAGAATGATTTATGCAAGATCTGGGATGAAGTGTTTTGTAATGAGGCAACTCCAATGGAGTATGCAGAGATTCTGGACAACCTCCGTTCAAAATTCTACCTCGGACAATGA 1260 0.4317 MLGSSSKGDAISSDHTRISSGQYGFPRNNDALTRLQSTFVPEDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMALIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEVGKFKGSMEDADFALRLEPNNQEIKKQYADAKSLYDNENLRKVSGALRSTVQGTQKVGKSETKVNGGSIPSISHVTQKSGPAEVHQTKGNERQVPAKESLLMEIDNRDTRARNSTQGQGNGSKEGSTSSNSLEQRNHRARKPEIKASVQELASRAASRALAEAAKNITPPTTAYQFEVSWKGFSGDLVLQTRLLKATSPPELPKILKNALSSTLLIEIIKCVASFFTEDMDLAVSFMENLTKVPRFDMIAMCLPSADKNDLCKIWDEVFCNEATPMEYAEILDNLRSKFYLGQ* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1373 419 SMART tpr_5 81 113 IPR019734 GO:0005515
Lja5g1373 419 SMART tpr_5 47 80 IPR019734 GO:0005515
Lja5g1373 419 SMART tpr_5 114 147 IPR019734 GO:0005515
Lja5g1373 419 MobiDBLite consensus disorder prediction 1 25 - -
Lja5g1373 419 Pfam Tetratricopeptide repeat 82 110 IPR019734 GO:0005515
Lja5g1373 419 ProSiteProfiles TPR repeat profile. 47 80 IPR019734 GO:0005515
Lja5g1373 419 Pfam Tetratricopeptide repeat 51 79 IPR001440 GO:0005515
Lja5g1373 419 MobiDBLite consensus disorder prediction 176 212 - -
Lja5g1373 419 Coils Coil 147 167 - -
Lja5g1373 419 Gene3D Tetratricopeptide repeat domain 36 145 IPR011990 GO:0005515
Lja5g1373 419 PANTHER OS05G0129900 PROTEIN 13 418 - -
Lja5g1373 419 MobiDBLite consensus disorder prediction 176 269 - -
Lja5g1373 419 Pfam Potential Monad-binding region of RPAP3 295 384 IPR025986 -
Lja5g1373 419 MobiDBLite consensus disorder prediction 237 259 - -
Lja5g1373 419 SUPERFAMILY TPR-like 45 165 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1373 Lja-Chr5 13787378 13793951 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1373 51 143 U-box Gene Family AT3G07370 35.106 1.03e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1373 K23002 - gmx:100784528 605.905