Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1371 ATGGCTCGTACTGGGGGGTCAAGGGCAGATTTCCAGGGATTCTTAAACGACTTGCAGGATTGGGAAGTTTCTACAAAGGACAACAAAGCGCGAAAATCCATGTCACAAAAGGAAAATGTTGGTGCTATTTCGTCTGATCGTACAAGGAATTCTCCAGGACAGTATGGTTTCCCAAGAAATAATGATACTCTCACCCGTCTACAGAGTACTTTTGTTCCGGAAGATGTTCCTGATGCGGCTTCTGAGAAAGATCTGGGTAATGAGTTTTTCAAACAGAAGAAGTTTAAGGAAGCTATTGACTGCTACTCATGGAGCATTGCTTTATCTCCAACAGCTGTAGCATATGCGAATAGGGCAATGGCCTTTATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTCGATGACCGTTACATAAAAGCATACTCGCGTCGAGCAACAGCTAGAAAAGAAGTTGGGAAGTTTAAAGGATCCATGGAGGATGCTGACTTTGCCTTGAGGTTGGAACCTAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGTCTTTGTATGATAATGAAAATCTTCGGAAAGTATCTGGAGCACTAAGAAGTACTGTACAGGGAGCTCAAAAAGTGGGAAAGTCAGAGACAAAAGTTAATGGAAGCAGCATCCCCTCCATTTCACATGTTACTCAAAAGTCAGGGCCAGCTGAAGTTCATCATCAGACAAAGAGAAATCACAGAGTTAGAAAGCCCGAAATAAAAGCGTCTGTTCAAGAGCTTGCTTCTCGTGCGGCTTCTCGAGCCTTGGCCGAAGCTGCCAAAAACATAACACCACCAACTACAGCTTATCAGTTTGAGGTCTCTTGGAAAGGGTTTTCAGGTGATCTTGTTTTGCAGACTCGACCAGGGGCGGACCCATGTGCCACGTCCCCCCCTGAATTACCAAAAATATTAAAAAATGCCTTATCATCTACCCTGCTAATTGAGATCATCAAGTGTGTTGCTTCCTTTTTCACTGAAGACATGGATTTGGCTGTCAGTTTTATGGAGAATTTGACCAAAGTACCGAGATTTGACATGATTGCAATGTGCCTTCCATCAGCAGATAAGAATGATTTATGCAAGATCTGGGATGAAGTGTTTTGTAATGAGGCAACTCCAATGGAGTATGCAGAGATTCTGGACAACCTCCGTTCAAAATTCTGCCTCGGACAATGA 1230 0.4317 MARTGGSRADFQGFLNDLQDWEVSTKDNKARKSMSQKENVGAISSDRTRNSPGQYGFPRNNDTLTRLQSTFVPEDVPDAASEKDLGNEFFKQKKFKEAIDCYSWSIALSPTAVAYANRAMAFIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEVGKFKGSMEDADFALRLEPNNQEIKKQYADAKSLYDNENLRKVSGALRSTVQGAQKVGKSETKVNGSSIPSISHVTQKSGPAEVHHQTKRNHRVRKPEIKASVQELASRAASRALAEAAKNITPPTTAYQFEVSWKGFSGDLVLQTRPGADPCATSPPELPKILKNALSSTLLIEIIKCVASFFTEDMDLAVSFMENLTKVPRFDMIAMCLPSADKNDLCKIWDEVFCNEATPMEYAEILDNLRSKFCLGQ* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1371 409 MobiDBLite consensus disorder prediction 212 252 - -
Lja5g1371 409 Pfam Tetratricopeptide repeat 114 142 IPR019734 GO:0005515
Lja5g1371 409 Pfam Potential Monad-binding region of RPAP3 282 374 IPR025986 -
Lja5g1371 409 PANTHER OS05G0129900 PROTEIN 8 408 - -
Lja5g1371 409 MobiDBLite consensus disorder prediction 25 60 - -
Lja5g1371 409 MobiDBLite consensus disorder prediction 35 60 - -
Lja5g1371 409 SMART tpr_5 146 179 IPR019734 GO:0005515
Lja5g1371 409 SMART tpr_5 79 112 IPR019734 GO:0005515
Lja5g1371 409 SMART tpr_5 113 145 IPR019734 GO:0005515
Lja5g1371 409 Coils Coil 179 199 - -
Lja5g1371 409 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Lja5g1371 409 SUPERFAMILY TPR-like 77 197 IPR011990 GO:0005515
Lja5g1371 409 MobiDBLite consensus disorder prediction 212 240 - -
Lja5g1371 409 Gene3D Tetratricopeptide repeat domain 68 177 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1371 Lja-Chr5 13763105 13773338 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1371 83 175 U-box Gene Family AT3G07370 35.106 1.94e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1371 K23002 - gmx:100784528 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1371 5 13763105 13773338 Lja5g1371 5 13763105 13773338 ECH