Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1367 ATGCAATGCAAGGAGAAATTTGACTCGGAGGAGAGCTTCTACACCAAACTCATTGAGTTCTTGGAGTACTATTCTGGACTTACTCTAATTTTCAATGTCCGAGAAACATTGTTGGACTTGTACCTGTTTTACTTGGAGGTCACCACAAGAGGAGGATATCACCAGGTTGGTCGAGATAAGAAATGGGGTGAAGTTGTCTCTGCACTGAAATTGGAAGGCAACAATGCAAAGTTATCTGCTCAAGTTGAAATGCTCTATGCATATCTTCTTTATGATTTCGAGCAAATGTACTTCTTCCAGTGTCCAGCAAAGCAAGCCAGCACCAAAGGTCTCCTTAAGAGGAATCACAACCCAGCGGCTAGTCCATGTCAATTAATGAACATTGAAGATGGCCAAAGGGTGACACTGGGCAAGAACTGCTATTCCCAAGTGACAGAGGCGGGAGAACAGCCGGTGCTTCTACCGGCGGCACCCTCAAATAACAAAGAAATGAAGAAGCGCAAAGGTGCTCCAGTGGGACAAAGGAATGCATATCAGATATTCCTCAAGAAGGAGTGTGCTCGATTGAGAGCTTGTCGTGAGGCCTCCTTAGATGGCACAAATATCCGACGCAAGGCTACTGATGCATGGAAGAACATGTCTGAGATTGAGAAACAGCCATATGTGGATGAAAGCAAGAAGAGCAAGGAAAAATATAAGGAGGAAGCAAATGAAGCAATGATCACTAACAATAAGCAGCCGAGCGTGGAAGATGTCAAGGAAGAAAACAGGACTAGTTTCTGTGGTGATTATCGCGTAACATCACAACCTGAGGCAGATAACTCACTTGTCAATGCACAACTTGGCATAACTCTTAAAATGGCTGTAGAAGTACCCAAGGAGTCCTTAGAGGAATGGGATACTTATTTGTCACTAGATTTACCAACTGGTGAATCCAAGTAA 942 0.4384 MQCKEKFDSEESFYTKLIEFLEYYSGLTLIFNVRETLLDLYLFYLEVTTRGGYHQVGRDKKWGEVVSALKLEGNNAKLSAQVEMLYAYLLYDFEQMYFFQCPAKQASTKGLLKRNHNPAASPCQLMNIEDGQRVTLGKNCYSQVTEAGEQPVLLPAAPSNNKEMKKRKGAPVGQRNAYQIFLKKECARLRACREASLDGTNIRRKATDAWKNMSEIEKQPYVDESKKSKEKYKEEANEAMITNNKQPSVEDVKEENRTSFCGDYRVTSQPEADNSLVNAQLGITLKMAVEVPKESLEEWDTYLSLDLPTGESK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1367 313 SUPERFAMILY HMG-box 155 236 IPR036910 -
Lja5g1367 313 Coils Coil 222 242 - -
Lja5g1367 313 Pfam ARID/BRIGHT DNA binding domain 10 94 IPR001606 GO:0003677
Lja5g1367 313 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 171 240 IPR009071 -
Lja5g1367 313 SUPERFAMILY ARID-like 9 99 IPR036431 GO:0003677
Lja5g1367 313 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 287 - -
Lja5g1367 313 Gene3D High mobility group box domain 157 238 IPR036910 -
Lja5g1367 313 Pfam HMG-box domain 171 237 IPR009071 -
Lja5g1367 313 ProSiteProfiles ARID domain profile. 7 98 IPR001606 GO:0003677
Lja5g1367 313 Gene3D - 1 114 IPR036431 GO:0003677
Lja5g1367 313 SMART bright_3 8 99 IPR001606 GO:0003677
Lja5g1367 313 SMART ARID_2 4 94 - -
Lja5g1367 313 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 8 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1367 Lja-Chr5 13698268 13701145 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1367 13 238 ARID Transcription Factor Family AT3G13350 26.538 8.91e-17 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lja5g1367 ARID 9.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1367 - - lja:Lj5g3v1529860.1 452.981