LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g1365	ATGGATTCTCTTCAACCAAACACGATAACAGATTCCGAAACCTCCCCTGATTCCAATCACAAAAAACGCCGCAAAATCACCCACCCTCAAAACCCCCTCAATCTCATGCCCTGGCGATCCAACGCCGACCAGCAGATCTACTCCCTCCGCCTCGCCAACGCCCTCCGCCGCATCCCCAGACCCGCCGCGCAAATCCGCGACACCGCCGACCGCGTCCTCGCCGCCACCGCCAAAGGCAGGACGCGTTGGAGCCGCGCGATTCTCACCCGCCGGAAGAAGCTCCGCATCAAGAAGGTCAAGCGAGCCGCCTCCGGATTGAGAAGAGCGGCGATCGGGAGGAGGAAGCGGTTACCGGCTGTGCAGAAGAAAGCGCGCGTTCTCGGCCGGTTGGTTCCTGGTTGTCGGAAGGTGTCGTTCCCGAACCTTCTGGAAGAAGCCACCGACTATATCTCCGCCTTGGAGATGCAGGTTCGAGCCATGGCTGCTCTCGCTGAGCTTCTCTCCGGTGGCGCGCCGGCGGCTCATGTGTTGACTTGA	537	0.6108	MDSLQPNTITDSETSPDSNHKKRRKITHPQNPLNLMPWRSNADQQIYSLRLANALRRIPRPAAQIRDTADRVLAATAKGRTRWSRAILTRRKKLRIKKVKRAASGLRRAAIGRRKRLPAVQKKARVLGRLVPGCRKVSFPNLLEEATDYISALEMQVRAMAALAELLSGGAPAAHVLT*	179

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g1365	178	CDD	bHLH_AtIBH1_like	113	164	IPR044549	GO:0006355
	Lja5g1365	178	PANTHER	TRANSCRIPTION FACTOR IBH1-LIKE 1	15	174	IPR044660	GO:0006355
	Lja5g1365	178	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	104	153	IPR011598	GO:0046983
	Lja5g1365	178	PANTHER	TRANSCRIPTION FACTOR BHLH150	15	174	-	-
	Lja5g1365	178	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	114	170	IPR036638	GO:0046983
	Lja5g1365	178	MobiDBLite	consensus disorder prediction	1	37	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g1365	Lja-Chr5	13684096	13685157	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g1365	1	160	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G09250	43.455	1.12e-38	129

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g1365	-		-	aprc:113873135	220.32

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja5g1365	5	13684096	13685157	Lja5g1365	5	13684096	13685157	ECH