Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1360 ATGGCACCCAAATCTGCCACCGCCGTCTCGCCCTTCCTGAAACCCGGTACCGCGGTGGAAGTCTGTTCCGAAGACGACGGTTTCCGCGGCTCCTGGTTCACCGGCAAGATCGTCCGCCGTCTCGCCAATAACAAGGTCTCGGTGGAGTATGATAGCCTGACTGAGGACGACGAAGGCACCAAGCCCTTGAAAGAAACCCTGCACATTCGCCAGCTCCGGCCACTCCCCTTGCCGGAGACTCAACATGAGTTCAAATTCGGCGACGAGGTGGACGCTTACCACAACGACGGGTGGTGGGAGGGTCATATAACTGAGGAATTAGGGAATGGTAGGTTCGCTGTGTATTTCAGAGTCTCCAAGGAGCGGATCGAGTTTCCGAAAGAGGAGCTGAGGACTCACCGTGAATGGATTGATGACCATTGGGATCCGCCGTTCGAATTGCCGAAGCAGGAGGAGCAGGTGAATGAATCGAACAAGGTGTTGTTGACACCGAATGCGAAGTCTGAGGAAGCTGTGAACAAGGTGTTGTTGACACCGAAAGCGAAGTCTGTGGAAGCTGTGAACAAGGTGTTGTTGACACCAAATGTGGAGTCTGAGGAAGCTGTGAACAAGGTGTTGTTGACACCAAATGTGGAGTCTGAGGAAGCTGTGAAGCTGAAGAAGAAGGAGGAGTTGTTTTGCGTGGGGGCGTTGGTTGAGGTTAGCAGTGACGAAGAGGGTTTCCAAGGGGCTTGGTTTTCTGCCACCATTGTCGAGGTTATGGAACAGGAGAAGTTCCTGGTTGAGTACCATAACCTGACTGATGACGATGGCCAACTTCTGAGAGAGGAGATTGATTCCCTGCACATAAGGCCTCCTCCTCCGCCAGAAAATGGTGTTGTTGCTCAATTTAGTCGTCTTGACGAAGTTGATGCTCTGCACAATGACGGCTGGTGGGTCGGTGTGATTTCTAAGGTTCTTGGTGACTCCAAGTATATAGTTTACTTCAGGGGCACCAATGAAGAATTGGAGTTTCAGCAATCCGAGTTGAGGGTGCATCAGGACTTCATTGGTGGCAAATGGGTTATGGCTAAGGTTGTTCAGGCGCGTTGA 1092 0.5183 MAPKSATAVSPFLKPGTAVEVCSEDDGFRGSWFTGKIVRRLANNKVSVEYDSLTEDDEGTKPLKETLHIRQLRPLPLPETQHEFKFGDEVDAYHNDGWWEGHITEELGNGRFAVYFRVSKERIEFPKEELRTHREWIDDHWDPPFELPKQEEQVNESNKVLLTPNAKSEEAVNKVLLTPKAKSVEAVNKVLLTPNVESEEAVNKVLLTPNVESEEAVKLKKKEELFCVGALVEVSSDEEGFQGAWFSATIVEVMEQEKFLVEYHNLTDDDGQLLREEIDSLHIRPPPPPENGVVAQFSRLDEVDALHNDGWWVGVISKVLGDSKYIVYFRGTNEELEFQQSELRVHQDFIGGKWVMAKVVQAR* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1360 363 Pfam Agenet domain 229 288 IPR008395 -
Lja5g1360 363 Pfam Agenet domain 16 76 IPR008395 -
Lja5g1360 363 PANTHER AGENET-LIKE DOMAIN, AGENET DOMAIN, PLANT TYPE-RELATED 222 360 - -
Lja5g1360 363 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 154 - -
Lja5g1360 363 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 222 360 - -
Lja5g1360 363 SMART agenet_At_2 82 138 IPR014002 -
Lja5g1360 363 SMART agenet_At_2 11 80 IPR014002 -
Lja5g1360 363 SMART agenet_At_2 295 351 IPR014002 -
Lja5g1360 363 SMART agenet_At_2 224 291 IPR014002 -
Lja5g1360 363 Gene3D - 216 297 - -
Lja5g1360 363 PANTHER AGENET-LIKE DOMAIN, AGENET DOMAIN, PLANT TYPE-RELATED 10 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1360 Lja-Chr5 13633430 13637197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1360 236 361 PHD Transcription Factor Family AT5G58610 25.325 6.76e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1360 - - lja:Lj5g3v1529970.1 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1360 5 13633430 13637197 Lja5g1360 5 13633430 13637197 ECH