Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1353 ATGAGTATCAATGGCAATTCAGTTACAGATGCAACGGTTGTGATCAGAGATCTGAGATTCACATACCCTGGCATCGACGGCCATCCACCGCCGGGTTCAACTCCGCTCATTCAAGACTTCTGCCTCACTCTCCATTCCGGCGATCGCTGCCTTCTCGTCGGATCCAATGGCGCTGGGAAGACGACGATCCTGAAGATATTGGGAGGGAAACACATGGTGGAGCCGGAAATGGTTCGTGTGCTCGGAAGATCGGCTTTTCACGATACCGGTTTGTCGTCTTCTGGTGATCTCTGTTATCTTGGTGGTGAGTGGAGGCGGGATGTTGCTTTTGCAGGTTTTGGGGTTTCGATTCAAATGGACATTTCTGCAGAGAAAATGATATTTGGTGTAGGTGGGATTAACCCAGAAAGAAGAGCGGAGCTAATTAAGGTATTAGGTATCGATCTTTCCTGGAGATTGCATAAAGTATCTGATGGTCAAAGAAGAAGAGTGCAAATTTGTATGGGTCTACTTAAACCATTCAAGGTTCTTCTTCTGGATGAGATAACAGTTGACCTTGATGTTCTAGCGAGAGCTGATCTTCTGAGTTTTCTAAAAAAGGAATGTGACGAGAGGGGTGCCACTATTATCTATGCAACTCACATATTTGACGGTCTTGAAGATTGGCCCACACATATGGTTTATGTAGCCCACGGAAAGCTCCAACTAGCTATGCCTATGGACAAAGTCAAAGAAAATAGCAAATTGTCACTGATGAGAACAGTAGAAAGTTGGCTGAGGAAAGAACGAGATGAAGATAGAAGAAAAAGAAAAGAGAGGAAGGATGCTGGCCTTCCTGAATTTGAAAAGCAAGTTGAGGGAAGCCGTGTAGCAGGAGGGGATCCAGGGCGTGCTGCTGTTCGAGCAGTGAATAATGGCTGGGCAGCAGGACGATTGCATTCCACCATTGCTGGTGAAGAAAACTTTCTACTAAGCTCTAACCGAGTATTGAGATAG 996 0.4578 MSINGNSVTDATVVIRDLRFTYPGIDGHPPPGSTPLIQDFCLTLHSGDRCLLVGSNGAGKTTILKILGGKHMVEPEMVRVLGRSAFHDTGLSSSGDLCYLGGEWRRDVAFAGFGVSIQMDISAEKMIFGVGGINPERRAELIKVLGIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLSFLKKECDERGATIIYATHIFDGLEDWPTHMVYVAHGKLQLAMPMDKVKENSKLSLMRTVESWLRKERDEDRRKRKERKDAGLPEFEKQVEGSRVAGGDPGRAAVRAVNNGWAAGRLHSTIAGEENFLLSSNRVLR* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1353 331 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 13 256 IPR003439 GO:0005524
Lja5g1353 331 Gene3D - 9 288 IPR027417 -
Lja5g1353 331 MobiDBLite consensus disorder prediction 262 296 - -
Lja5g1353 331 MobiDBLite consensus disorder prediction 262 282 - -
Lja5g1353 331 PANTHER ABC TRANSPORTER I FAMILY MEMBER 20 10 331 - -
Lja5g1353 331 SMART AAA_5 46 233 IPR003593 -
Lja5g1353 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 252 IPR027417 -
Lja5g1353 331 Pfam ABC transporter 39 183 IPR003439 GO:0005524
Lja5g1353 331 PANTHER ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED 10 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1353 Lja-Chr5 13575965 13579319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1353 13 210 Calmodulin-binding Proteins AT2G36910 23.256 4.32e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1353 K12608 - gmx:100782386 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1353 5 13575965 13579319 Lja5g1353 5 13575965 13579319 ECH