Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1352 ATGACGATGAGTAATGTGGTTCCACTCATAGCCATGGTGATAGTGCAGTTTAGCTATGCAGGGATGAATATTACCTCAAAGCTTGCAATTGAATCTGGCATGCACCCTCTTGTCCTTGTTGCTTATCGTCAAATCTTTGCTACTCTGTCCCTTGCTCCCTTCGCTTATTGGTTGGAACGAAGTACGGCTCCTCGGATGACAATGCCGATTTTTCTCCAGATATTACTATCTTCCTTAACAGGAGTTACAGCAAATCAAGTGTTGTACTTCGTGGGGCTTAAATACACAACCGCTACAATTACATGTGCACTGACAAATTTGCTACCAGCTTTCACAATCATCCTTGCTGTCCTCTTCAGACAAGAGTATTTGAGCTTTAAGACGAAGGCCGGGATAGCTAAGGTGTTAGGCACATTGCTGAGTGTGGGAGGAGCCCTGCTTCTATCATTTTACAATGGAAAAGTTCTTGATCTAGGAGAGTCAAAGATTCATTGGGGATATGCAGATAAATTGAATGGAACAACCTCCTCCGGTGGCGGATCAATCGGGCTTTTAGGCCCGCTTGCCGTAATTGCTAGTACTTTTGTTTGGGCTATATGGTTCGTAGTTCAAGCAAACATTAGCAGGAACTTCCCTGCTCCTTACACAAGCAGCTTCTACATGTGTTTCTTGGCAAGTATTCAGAGCGTGGTCATTGCAGTGGGCTTTCAACACAATCTCGCAGCTTGGTCACTTCACAACACTATGAGACTCACCTCTGCACTTTACGCGGGAATTATTTCGACGGGGCTAACGTATGCTCTCATGTCATGGACCATTGAGAGGAAAGGTGCTCTTTATGCCTCTATATTCTCCCCTTTGGTTCTTGTCATCACTGCTGTTATAAGCTGGGCTGTGCTTCACGAGAAATTATACATGGGCACTGCCATAGGTTCTGTCGTGATAGTAATTGGGCTCTATTCTGCTCTGTGGGGAAAGAGCAAGGAGATTAAAAGTGGCACCATGCAAGAAACAATCACGGATGATGAAAAGGATGACATGAATGACCTGGAATTGCAACCCTATAATCTTCCAAACCATGCTTGTGCTTGA 1092 0.446 MTMSNVVPLIAMVIVQFSYAGMNITSKLAIESGMHPLVLVAYRQIFATLSLAPFAYWLERSTAPRMTMPIFLQILLSSLTGVTANQVLYFVGLKYTTATITCALTNLLPAFTIILAVLFRQEYLSFKTKAGIAKVLGTLLSVGGALLLSFYNGKVLDLGESKIHWGYADKLNGTTSSGGGSIGLLGPLAVIASTFVWAIWFVVQANISRNFPAPYTSSFYMCFLASIQSVVIAVGFQHNLAAWSLHNTMRLTSALYAGIISTGLTYALMSWTIERKGALYASIFSPLVLVITAVISWAVLHEKLYMGTAIGSVVIVIGLYSALWGKSKEIKSGTMQETITDDEKDDMNDLELQPYNLPNHACA* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1352 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 328 - -
Lja5g1352 363 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 149 - -
Lja5g1352 363 PANTHER WAT1-RELATED PROTEIN 6 356 IPR030184 GO:0016021|GO:0022857
Lja5g1352 363 Pfam EamA-like transporter family 9 149 IPR000620 GO:0016020|GO:0016021
Lja5g1352 363 Pfam EamA-like transporter family 185 321 IPR000620 GO:0016020|GO:0016021
Lja5g1352 363 PANTHER WAT1-RELATED PROTEIN 6 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1352 Lja-Chr5 13572323 13575850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1352 1 327 Nodulin-like Gene Family AT1G09380 53.823 4.70e-130 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1352 - - gmx:100802059 508.064