Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1349 ATGCCGCAAAGGAAGTTCTACTGCGATTACTGCGACAAGCTATTCCAAGACACGCCAGGCGATCGGAAACGCCACGCTCGAGGCATTCAACACCAACAAGCCAAAGCTCGCTGGTACGATTCCATCAAACAACAAGAATTTCAACAACAACAACAGCGTCTTCTACCACCACACCATCAACAACCCCTTTGCTTTCACTTCGTCAACACGGGTTTTTGCCGTTACGGCGATTCGTGCAATTACATTCATCCCAATGCCAATAATATGCAGCAGCAGCCTGCAATAATAAGCACACAAGGGAATGTGGTGAGAGATAGCATGGGAATGGGAGTTTCGTGGGGGAATTTGCCGCCGTCGCTGCAGCCTCCGCCTGAGGGAGGATATCCCCCTCTTCCCTTTGTGGATTGGGGGTAA 414 0.5048 MPQRKFYCDYCDKLFQDTPGDRKRHARGIQHQQAKARWYDSIKQQEFQQQQQRLLPPHHQQPLCFHFVNTGFCRYGDSCNYIHPNANNMQQQPAIISTQGNVVRDSMGMGVSWGNLPPSLQPPPEGGYPPLPFVDWG* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1349 137 SUPERFAMILY beta-beta-alpha zinc fingers 4 58 IPR036236 -
Lja5g1349 137 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 61 84 IPR000571 GO:0046872
Lja5g1349 137 Gene3D - 58 91 - -
Lja5g1349 137 PANTHER NUCLEASE-RELATED 1 137 - -
Lja5g1349 137 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Lja5g1349 137 SUPERFAMILY CCCH zinc finger 56 85 IPR036855 GO:0046872
Lja5g1349 137 ProSiteProfiles Zinc finger C3H1-type profile. 59 86 IPR000571 GO:0046872
Lja5g1349 137 SMART c3hfinal6 59 85 IPR000571 GO:0046872
Lja5g1349 137 Gene3D Classic Zinc Finger 2 57 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1349 53 97 C3H Transcription Factor Family AT1G04990 44.444 2.09e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja5g1349 zf-U1 4.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1349 K13152 - gmx:100527203 168.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1349 5 13534596 13535592 Lja5g1349 5 13534596 13535592 ECH