Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1348 ATGGCTTCGGTTGGTGTGGCACCAACTTCAGGTGTGAGAGAAGCCAGTGGTTGCCATGGAGCAGCAGGTGTTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAGAAATGGAAGCCACAGTTGTTGATGGTAACGATGTAACGGAGACTGGACATATCATTGTCACTACCATTGGGGGCAGAAATGGTCAGCCGAAGCAGACTATAAGCTATATGGCAGAGCGTATTGTCGGGCATGGATCGTTTGGAGTTGTCTTCCAGGCTAAATGCTTGGAAACTGGTGAAACTGTCGCTATCAAGAAGGTTCTTCAGGACAAGAGGTACAAGAACCGGGAGCTGCAGACAATGCGCCTTCTTGACCACCCGAATGTCGTTGCTTTGAAGCATTGTTTCTTTTCAACTACTGAAAAGGATGAACTGTACCTTAATTTGGTACTTGAGTATGTTCCTGAAACAGTTCATCGTGTGATCAAACATTACAACAAGTTGAATCAAAGGTTACCACTGATTTATGTGAAGCTCTACACATACCAGATCTTTAGAGCATTATCTTATATTCATCGATGTATCAGAGTCTGCCATCGGGACATCAAGCCTCAAAATCTATTGGTCAATCCACACACTCACCAAGTTAAGTTATGTGACTTTGGAAGTGCTAAAGTCTTGGTAAAAGGAGAACCAAATATATCATACATATGTTCTAGATATTATAGAGCACCTGAGCTTATATTTGGAGCAACTGAGTATACTACAGCTATTGATGTTTGGTCTGTTGGTTGTGTTTTAGCTGAACTGCTGCTTGGACAGCCTTTGTTTCCTGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATTATCAAGGTTCTGGGCACTCCTACAAGGGAAGAGATTAAATGCATGAATCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAAGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACCTGCGGTGCACAGCTTTAGATGCCTTGACCCATCCTTTCTTTGATGAGCTTCGTGAACCAAGCACTCGCTTGCCAACCGGCCGTTTTCTTCCACCATTATTTAACTTCAAATCTCATGAACTGAAAGGAGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCGGAGCATGCGAGGAAGCAATGCCCATTTCTTGGCTTGTAA 1239 0.4294 MASVGVAPTSGVREASGCHGAAGVDRLPEEMNDMKIRDDREMEATVVDGNDVTETGHIIVTTIGGRNGQPKQTISYMAERIVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYNKLNQRLPLIYVKLYTYQIFRALSYIHRCIRVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELREPSTRLPTGRFLPPLFNFKSHELKGVPAEILVKLVPEHARKQCPFLGL* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1348 412 CDD STKc_GSK3 71 363 IPR039192 -
Lja5g1348 412 MobiDBLite consensus disorder prediction 1 30 - -
Lja5g1348 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Lja5g1348 412 Pfam Protein kinase domain 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1348 412 Gene3D Phosphorylase Kinase; domain 1 60 155 - -
Lja5g1348 412 SMART serkin_6 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1348 412 PANTHER BNAC03G34380D PROTEIN 1 410 - -
Lja5g1348 412 Gene3D Transferase(Phosphotransferase) domain 1 156 404 - -
Lja5g1348 412 ProSiteProfiles Protein kinase domain profile. 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g1348 412 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 410 - -
Lja5g1348 412 SUPERFAMILY Protein kinase-like (PK-like) 75 386 IPR011009 -
Lja5g1348 412 ProSitePatterns Protein kinases ATP-binding region signature. 82 106 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1348 Lja-Chr5 13527259 13531517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1348 82 388 MAP Kinase Gene Family AT2G43790 36.050 6.94e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lja5g1348 Pkinase 7.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1348 K00924 - gmx:100780226 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0524 1 4765900 4770160 Lja5g1348 5 13527259 13531517 ECH
Lja5g1348 5 13527259 13531517 Lja5g1348 5 13527259 13531517 ECH