Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1335 ATGAAAGTCAACATCCTGCGTATCCTTCTCATTTCTTCTTCATGGTTCCTAATTTCTGTCTGCTTTGAATGTAGATGGCATGCTGTTGCGTCGTGGACTTGGGATGCTCAGGATGAAACATGTGGGATTTGTAGGATGGCCTTTGATGGATGCTGTCCTGATTGTAAACTTCCTGGAGATGATTGCCCCCTCATTTGGGGTGCATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGGGAATGGCAGTTTAAAGGATGA 309 0.4595 MKVNILRILLISSSWFLISVCFECRWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1335 102 SUPERFAMILY RING/U-box 25 101 - -
Lja5g1335 102 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 25 101 - -
Lja5g1335 102 PANTHER RING BOX 25 101 - -
Lja5g1335 102 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 102 IPR013083 -
Lja5g1335 102 CDD RING-H2_APC11 38 100 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Lja5g1335 102 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 25 101 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Lja5g1335 102 ProSiteProfiles Zinc finger RING-type profile. 52 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1335 Lja-Chr5 13388830 13391965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1335 52 95 C3H Transcription Factor Family AT1G72220 41.304 1.29e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1335 K03358 - oeu:111382202 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1335 5 13388830 13391965 Lja5g1335 5 13388830 13391965 ECH