Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1334 ATGGGCACAGCAACATGCGTAGACATCATTCTTGCCATCATCCTACCTCCTCTTGGAGTTTTCCTTAGGTTTGGATGCAAGGTGGAGTTCTGGATCTGTTTGCTGCTGACAATTTTAGGTTATATACCTGGAATTATCTATGCTATCTACGCTATCACCAAGTGA 165 0.4303 MGTATCVDIILAIILPPLGVFLRFGCKVEFWICLLLTILGYIPGIIYAIYAITK* 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1334 54 ProSitePatterns Uncharacterized protein family UPF0057 signature. 10 25 IPR000612 GO:0016021
Lja5g1334 54 Pfam Proteolipid membrane potential modulator 6 52 IPR000612 GO:0016021
Lja5g1334 54 PANTHER BNAC03G34420D PROTEIN 2 54 - -
Lja5g1334 54 PANTHER HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED 2 54 IPR000612 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1334 Lja-Chr5 13386636 13387793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1334 1 54 RCI2 Gene Family AT3G05880 83.333 3.30e-27 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1334 - - cit:102621787 98.2117